ochman_example_analysis

DIRECTORY: ./ochman_example_analysis This contains example scripts and analysis similar to the Cephalotes example above. In addition to example output for four OTU widths (./ochman_example_analysis/93, 95, 97, 99), example scripts for analysis at two levels of rarefaction (1000 and 15000 sequences/sample), metadata mapping (./ochman_example_analysis/ochman_split_map.txt), results from the beta diversity sensitivity analysis (./ochman_example_analysis/bdiv_sensitivity_grids), and example host trees (./ochman_example_analysis/ape_phylogram_ILS_relabeled_furcated.tre, ape_cladogram_relabeled_relabeled_furcated.tre), there are several additional files. ape_sample_locations.txt are Lat/Lon values estimated from Figure 1 of Ochman et al 2010, used to estimate geographic distances for the partial Mantel tests