DIRECTORY: ./ochman_original_data ./ochman_original_data contains the original sequence data as supplied by Prof. Howard Ochman (Personal Communication, July 12, 2013). This is in the format of a combined fasta file (primer_trimed.fasta) and a sample mapping file (sample_map.txt). Additionally, the folder contains a simple python script used to convert the sequence file to Qiime post-split_libraries.py format; the result of this script is ./ochman_example_analysis/seqs.fna
Fasta files containing the quality filtered sequences used as the basis for all clustering analyses
Raw sequence data from the Roche 454 GS FLX sequencer, region 2 (split_library_output_2). These data...
This fasta file contains all different sequences found in the experiments, except sequences that occ...
DIRECTORY: ./ochman_original_data ./ochman_original_data contains the original sequence data as sup...
This file contains the original fasta sequences dataset from each of the 92 samples studied here. Th...
This archive file contains all input and output files required for and produced by the QIIME pipelin...
DIRECTORY: ./ochman_example_analysis This contains example scripts and analysis similar to the Ceph...
This file contains the raw-read data from the 454 sequencing run used to produce the results in the ...
Raw sequence data from the Roche 454 GS FLX sequencer, region 1 (split_library_output_1). These dat...
This fasta file contains unfiltered sequencing data (i.e. merged reads assigned to their original sa...
zip-compressed archive containing sequence alignments in fasta format. These sequences were used thr...
Sequence data analysed in this study (fastq and fasta file). The full sequencing run is additionally...
Consensus sequences in FASTA format for all exons captured, generated with the following quality fil...
Zipped file containing fastq files for each sample. Files were generated using obitools by pairwise ...
This data file contains all the mitochondrial sequences used in the study Beresford et al. in a fast...
Fasta files containing the quality filtered sequences used as the basis for all clustering analyses
Raw sequence data from the Roche 454 GS FLX sequencer, region 2 (split_library_output_2). These data...
This fasta file contains all different sequences found in the experiments, except sequences that occ...
DIRECTORY: ./ochman_original_data ./ochman_original_data contains the original sequence data as sup...
This file contains the original fasta sequences dataset from each of the 92 samples studied here. Th...
This archive file contains all input and output files required for and produced by the QIIME pipelin...
DIRECTORY: ./ochman_example_analysis This contains example scripts and analysis similar to the Ceph...
This file contains the raw-read data from the 454 sequencing run used to produce the results in the ...
Raw sequence data from the Roche 454 GS FLX sequencer, region 1 (split_library_output_1). These dat...
This fasta file contains unfiltered sequencing data (i.e. merged reads assigned to their original sa...
zip-compressed archive containing sequence alignments in fasta format. These sequences were used thr...
Sequence data analysed in this study (fastq and fasta file). The full sequencing run is additionally...
Consensus sequences in FASTA format for all exons captured, generated with the following quality fil...
Zipped file containing fastq files for each sample. Files were generated using obitools by pairwise ...
This data file contains all the mitochondrial sequences used in the study Beresford et al. in a fast...
Fasta files containing the quality filtered sequences used as the basis for all clustering analyses
Raw sequence data from the Roche 454 GS FLX sequencer, region 2 (split_library_output_2). These data...
This fasta file contains all different sequences found in the experiments, except sequences that occ...