This doctoral thesis presents new approaches for the characterisation of ultrafast energy flow in complex systems, based on concepts of coherent control. By initiating a photoreaction with femtosecond pulses whose temporal phase and amplitude are shaped in such a manner that specific molecular vibrations and states are addressed, the energy flow can be steered at will. The comparison between the ensuing energy flow patterns following shaped and unshaped excitation pulses constitutes a differential measurement of the function of the controlled vibrations and states within the photoreaction. Coherent control as a spectroscopic tool is first applied to biological systems, specifically the light harvesting complex LH2 from the photosynthetic pu...