Over-representation testing completed based on purple and black gene set clusters, as well as both clusters combined, identified from heatmap (Fig 2) using Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Twenty-two pathways had more significant genes than expected by chance in at least one of the three comparisons (raw p-value < 0.005). The color of the box represents the –log10(p-value) to give more significant values darker color while the actual p-values are printed inside each box; the grey box indicates no genes in the black cluster mapped to that pathway.</p
<p>(<b>reference = 1095 probes with greatest variance</b>)<b>.</b> GO and KEGG pathway analyses for...
<p>The coloring schema is as following: MinPath (red triangles), naïve mapping approach (green), and...
<p>Enrichment analysis on KEGG pathways of the 200 top-ranked genes. The figure shows the results fo...
The pathways in the left column were obtained from the intersection of enriched pathways from signif...
<p>The color and size of the dots in the scatterplot represent the range of the negative log10-trans...
<p>The significant pathways: “p53” (A) and “cell cycle” (B) of regulated genes are demonstrated. Dif...
<p><i>KEGG pathway identifier (ID)</i> and <i>description</i> is enclosed in the table. Pathway’s <i...
<p>The coloring of the q-values indicates the significance of the rich factor; the circle indicates ...
<p>The x-axis indicates the p value calculated in enrichment test. The size of circles indicates the...
Genes coding for unknown products were not considered in the analysis. The top 15 enriched KEGG path...
<p>There are 46 unique genes in the 43 significant pathways that have their gene-level meta-analysis...
<p>The 19 significantly enriched pathways identified by Kyoto Encyclopedia of Genes and Genomes (KEG...
Summary of the results from the pathway overrepresentation analyses based on the 87 DMEGs in the STR...
<p>The heatmaps depict overrepresentation of genes involved in relevant pathways among the genes der...
The vertical axis indicates the name of pathway, and the horizontal axis indicates the corresponding...
<p>(<b>reference = 1095 probes with greatest variance</b>)<b>.</b> GO and KEGG pathway analyses for...
<p>The coloring schema is as following: MinPath (red triangles), naïve mapping approach (green), and...
<p>Enrichment analysis on KEGG pathways of the 200 top-ranked genes. The figure shows the results fo...
The pathways in the left column were obtained from the intersection of enriched pathways from signif...
<p>The color and size of the dots in the scatterplot represent the range of the negative log10-trans...
<p>The significant pathways: “p53” (A) and “cell cycle” (B) of regulated genes are demonstrated. Dif...
<p><i>KEGG pathway identifier (ID)</i> and <i>description</i> is enclosed in the table. Pathway’s <i...
<p>The coloring of the q-values indicates the significance of the rich factor; the circle indicates ...
<p>The x-axis indicates the p value calculated in enrichment test. The size of circles indicates the...
Genes coding for unknown products were not considered in the analysis. The top 15 enriched KEGG path...
<p>There are 46 unique genes in the 43 significant pathways that have their gene-level meta-analysis...
<p>The 19 significantly enriched pathways identified by Kyoto Encyclopedia of Genes and Genomes (KEG...
Summary of the results from the pathway overrepresentation analyses based on the 87 DMEGs in the STR...
<p>The heatmaps depict overrepresentation of genes involved in relevant pathways among the genes der...
The vertical axis indicates the name of pathway, and the horizontal axis indicates the corresponding...
<p>(<b>reference = 1095 probes with greatest variance</b>)<b>.</b> GO and KEGG pathway analyses for...
<p>The coloring schema is as following: MinPath (red triangles), naïve mapping approach (green), and...
<p>Enrichment analysis on KEGG pathways of the 200 top-ranked genes. The figure shows the results fo...