Additional file 1: of Genomic analysis of transcriptional networks directing progression of cell states during MGE development

Additional file 1 of Peroxiredoxin II regulates exosome secretion from dermal mesenchymal stem cells through the ISGylation signaling pathway

Ying-Hao Han (16017092)
Ying-Ying Mao (480024)
Kyung Ho Lee (3207993)
Hee Jun Cho (2096500)
Nan-Nan Yu (11479800)
Xiao-Ya Xing (17263838)
Ai-Guo Wang (1502680)
Mei-Hua Jin (324210)
Kwan Soo Hong (474738)
Hu-Nan Sun (16017080)
Taeho Kwon (4845361)

October 2023

Additional file 1: Supplementary Fig 1. (A) Electron micrographs showing MVBs in Prx II+/+and Prx II...

Additional file 2: of A robust Pax7EGFP mouse that enables the visualization of dynamic behaviors of muscle stem cells

Elisia Tichy (5681717)
David Sidibe (5681720)
Christopher Greer (5681723)
Nicholas Oyster (5681726)
Panteleimon Rompolas (5681729)
Nadia Rosenthal (112318)
Helen Blau (764590)
Foteini Mourkioti (5681732)

August 2018

Figure S2. Pax7EGFP copy number variation analysis and in-depth genotyping, and effect of transgene ...

Additional file 1: of Epigenetic regulation of transcription factor promoter regions by low-dose genistein through mitogen-activated protein kinase and mitogen-and-stress activated kinase 1 nongenomic signaling

Linda Yu (1453492)
Kyle Ham (3447581)
Xiaohua Gao (3447578)
Lysandra Castro (3447572)
Yitang Yan (312121)
Grace Kissling (3447566)
Charles Tucker (3447584)
Norris Flagler (3447575)
Ray Dong (3447587)
Trevor Archer (455785)
Darlene Dixon (3447569)

August 2016

Colocalization of phosphorylated (Phospho-) MSK1 and H3S10ph in ht-UtLM cells treated with genistein...

Additional file 2: of Genomic analysis of transcriptional networks directing progression of cell states during MGE development

Magnus Sandberg (3541586)
Leila Taher (179979)
Jianxin Hu (693557)
Brian Black (5750213)
Alex Nord (5750216)
John Rubenstein (5750219)

September 2018

Forebrain activity of hs623. Coronal sections of the hs623 transgene showing its activity in forebra...

Additional file 3: of Genomic analysis of transcriptional networks directing progression of cell states during MGE development

Magnus Sandberg (3541586)
Leila Taher (179979)
Jianxin Hu (693557)
Brian Black (5750213)
Alex Nord (5750216)
John Rubenstein (5750219)

September 2018

DNA sequences of hs623KO founder mice. DNA sequence of the modified hs623 locus in the five founder ...

Additional file 4: of Genomic analysis of transcriptional networks directing progression of cell states during MGE development

Magnus Sandberg (3541586)
Leila Taher (179979)
Jianxin Hu (693557)
Brian Black (5750213)
Alex Nord (5750216)
John Rubenstein (5750219)

September 2018

Tcf12 expression in Sox6 conditional knockout. In situ analysis of Tcf12 in WT (A) and Sox6 conditio...

Additional file 2: of Epigenetic regulation of transcription factor promoter regions by low-dose genistein through mitogen-activated protein kinase and mitogen-and-stress activated kinase 1 nongenomic signaling

Linda Yu (1453492)
Kyle Ham (3447581)
Xiaohua Gao (3447578)
Lysandra Castro (3447572)
Yitang Yan (312121)
Grace Kissling (3447566)
Charles Tucker (3447584)
Norris Flagler (3447575)
Ray Dong (3447587)
Trevor Archer (455785)
Darlene Dixon (3447569)

August 2016

Differential expression of cell proliferation related transcription factor genes induced by genistei...

Additional file 1: of Matrix metalloproteinase-9 (MMP9) is involved in the TNF-α-induced fusion of human M13SV1-Cre breast epithelial cells and human MDA-MB-435-pFDR1 cancer cells

Julian Weiler (5086025)
Marieke Mohr (5086022)
Kurt Zänker (4328026)
Thomas Dittmar (411004)

April 2018

Differentially-regulated genes in TNF-α-treated M13SV1-Cre and MDA-MB-435-pFDR1 cells under normoxic...

Additional file 2: Figure S3. of Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phase

Akihiro Kuno (4733382)
Ken Nishimura (445291)
Satoru Takahashi (32871)

January 2018

Epigenetic modification during reprogramming. (a) Gene expression patterns during reprogramming in f...

Additional file 1: of JAK/STAT3 regulated global gene expression dynamics during late-stage reprogramming process

Ling Wang (56577)
Zongliang Jiang (4916698)
Delun Huang (4916707)
Jingyue Duan (4916695)
Chang Huang (418702)
Shannon Sullivan (27443)
Kaneha Vali (4916701)
Yexuan Yin (4916704)
Ming Zhang (9736)
Jill Wegrzyn (141670)
Xiuchun Tian (628675)
Young Tang (4916710)

March 2018

Schematic representation of the Dlk1-Dio3 region at mouse chromosome 12qF1. The Gtl2-Rian-Mirg lincR...

Additional file 1: Table S1. of Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

Malina Doynova (3908422)
James Markworth (3690100)
David Cameron-Smith (147908)
Mark Vickers (259145)
Justin O’Sullivan (3908572)

April 2017

Cell numbers at time of plating and harvesting. Table S2. Alignment summary of RNA-seq reads onto th...

Additional file 1: of Posttranslationally modified progesterone receptors direct ligand-specific expression of breast cancer stem cell-associated gene programs

Todd Knutson (3928178)
Thu Truong (3928169)
Shihong Ma (281257)
Nicholas Brady (3928166)
Megan Sullivan (3928175)
Ganesh Raj (3459857)
Kathryn Schwertfeger (3928172)
Carol Lange (562170)

April 2017

Gene sets derived from T47D cells expressing WT PR and KR PR. These gene sets were used in the analy...

Additional file 2: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

Genes in modules 1 and 2 (as identified by WGCNA) are enriched for predicted estrogen-responsive gen...

Additional file 2: Figure S1. of Dynamics of transcriptional (re)-programming of syncytial nuclei in developing muscles

Laetitia Bataillé (774448)
Hadi Boukhatmi (4100773)
Jean-Louis Frendo (86936)
Alain Vincent (56676)

June 2017

Identification of a Kr CRM active in the LTs and VA2 muscles. (A) Chromosome (2R: 25,200,000–25,237,...

Additional file 2: of Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

Ji Dong (553653)
Yuqiong Hu (4963780)
Xiaoying Fan (3419693)
Xinglong Wu (1347408)
Yunuo Mao (4963774)
Boqiang Hu (3419696)
Hongshan Guo (4963777)
Lu Wen (385160)
Fuchou Tang (14392)

March 2018

Barcode-RT primer information, cell cycle gene list, and E-, M- and S-score gene list. (XLSX 18 kb

Additional file 1 of Peroxiredoxin II regulates exosome secretion from dermal mesenchymal stem cells through the ISGylation signaling pathway

Ying-Hao Han (16017092)
Ying-Ying Mao (480024)
Kyung Ho Lee (3207993)
Hee Jun Cho (2096500)
Nan-Nan Yu (11479800)
Xiao-Ya Xing (17263838)
Ai-Guo Wang (1502680)
Mei-Hua Jin (324210)
Kwan Soo Hong (474738)
Hu-Nan Sun (16017080)
Taeho Kwon (4845361)

October 2023

Additional file 1: Supplementary Fig 1. (A) Electron micrographs showing MVBs in Prx II+/+and Prx II...

Additional file 2: of A robust Pax7EGFP mouse that enables the visualization of dynamic behaviors of muscle stem cells

Elisia Tichy (5681717)
David Sidibe (5681720)
Christopher Greer (5681723)
Nicholas Oyster (5681726)
Panteleimon Rompolas (5681729)
Nadia Rosenthal (112318)
Helen Blau (764590)
Foteini Mourkioti (5681732)

August 2018

Figure S2. Pax7EGFP copy number variation analysis and in-depth genotyping, and effect of transgene ...

Additional file 1: of Epigenetic regulation of transcription factor promoter regions by low-dose genistein through mitogen-activated protein kinase and mitogen-and-stress activated kinase 1 nongenomic signaling

Linda Yu (1453492)
Kyle Ham (3447581)
Xiaohua Gao (3447578)
Lysandra Castro (3447572)
Yitang Yan (312121)
Grace Kissling (3447566)
Charles Tucker (3447584)
Norris Flagler (3447575)
Ray Dong (3447587)
Trevor Archer (455785)
Darlene Dixon (3447569)

August 2016

Colocalization of phosphorylated (Phospho-) MSK1 and H3S10ph in ht-UtLM cells treated with genistein...

Additional file 2: of Genomic analysis of transcriptional networks directing progression of cell states during MGE development

Magnus Sandberg (3541586)
Leila Taher (179979)
Jianxin Hu (693557)
Brian Black (5750213)
Alex Nord (5750216)
John Rubenstein (5750219)

September 2018

Forebrain activity of hs623. Coronal sections of the hs623 transgene showing its activity in forebra...

Additional file 3: of Genomic analysis of transcriptional networks directing progression of cell states during MGE development

Magnus Sandberg (3541586)
Leila Taher (179979)
Jianxin Hu (693557)
Brian Black (5750213)
Alex Nord (5750216)
John Rubenstein (5750219)

September 2018

DNA sequences of hs623KO founder mice. DNA sequence of the modified hs623 locus in the five founder ...

Additional file 4: of Genomic analysis of transcriptional networks directing progression of cell states during MGE development

Magnus Sandberg (3541586)
Leila Taher (179979)
Jianxin Hu (693557)
Brian Black (5750213)
Alex Nord (5750216)
John Rubenstein (5750219)

September 2018

Tcf12 expression in Sox6 conditional knockout. In situ analysis of Tcf12 in WT (A) and Sox6 conditio...

Additional file 2: of Epigenetic regulation of transcription factor promoter regions by low-dose genistein through mitogen-activated protein kinase and mitogen-and-stress activated kinase 1 nongenomic signaling

Linda Yu (1453492)
Kyle Ham (3447581)
Xiaohua Gao (3447578)
Lysandra Castro (3447572)
Yitang Yan (312121)
Grace Kissling (3447566)
Charles Tucker (3447584)
Norris Flagler (3447575)
Ray Dong (3447587)
Trevor Archer (455785)
Darlene Dixon (3447569)

August 2016

Differential expression of cell proliferation related transcription factor genes induced by genistei...

Additional file 1: of Matrix metalloproteinase-9 (MMP9) is involved in the TNF-α-induced fusion of human M13SV1-Cre breast epithelial cells and human MDA-MB-435-pFDR1 cancer cells

Julian Weiler (5086025)
Marieke Mohr (5086022)
Kurt Zänker (4328026)
Thomas Dittmar (411004)

April 2018

Differentially-regulated genes in TNF-α-treated M13SV1-Cre and MDA-MB-435-pFDR1 cells under normoxic...

Additional file 2: Figure S3. of Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phase

Akihiro Kuno (4733382)
Ken Nishimura (445291)
Satoru Takahashi (32871)

January 2018

Epigenetic modification during reprogramming. (a) Gene expression patterns during reprogramming in f...

Additional file 1: of JAK/STAT3 regulated global gene expression dynamics during late-stage reprogramming process

Ling Wang (56577)
Zongliang Jiang (4916698)
Delun Huang (4916707)
Jingyue Duan (4916695)
Chang Huang (418702)
Shannon Sullivan (27443)
Kaneha Vali (4916701)
Yexuan Yin (4916704)
Ming Zhang (9736)
Jill Wegrzyn (141670)
Xiuchun Tian (628675)
Young Tang (4916710)

March 2018

Schematic representation of the Dlk1-Dio3 region at mouse chromosome 12qF1. The Gtl2-Rian-Mirg lincR...

Additional file 1: Table S1. of Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

Malina Doynova (3908422)
James Markworth (3690100)
David Cameron-Smith (147908)
Mark Vickers (259145)
Justin O’Sullivan (3908572)

April 2017

Cell numbers at time of plating and harvesting. Table S2. Alignment summary of RNA-seq reads onto th...

Additional file 1: of Posttranslationally modified progesterone receptors direct ligand-specific expression of breast cancer stem cell-associated gene programs

Todd Knutson (3928178)
Thu Truong (3928169)
Shihong Ma (281257)
Nicholas Brady (3928166)
Megan Sullivan (3928175)
Ganesh Raj (3459857)
Kathryn Schwertfeger (3928172)
Carol Lange (562170)

April 2017

Gene sets derived from T47D cells expressing WT PR and KR PR. These gene sets were used in the analy...

Additional file 2: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

Genes in modules 1 and 2 (as identified by WGCNA) are enriched for predicted estrogen-responsive gen...

Additional file 2: Figure S1. of Dynamics of transcriptional (re)-programming of syncytial nuclei in developing muscles

Laetitia Bataillé (774448)
Hadi Boukhatmi (4100773)
Jean-Louis Frendo (86936)
Alain Vincent (56676)

June 2017

Identification of a Kr CRM active in the LTs and VA2 muscles. (A) Chromosome (2R: 25,200,000–25,237,...

Additional file 2: of Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

Ji Dong (553653)
Yuqiong Hu (4963780)
Xiaoying Fan (3419693)
Xinglong Wu (1347408)
Yunuo Mao (4963774)
Boqiang Hu (3419696)
Hongshan Guo (4963777)
Lu Wen (385160)
Fuchou Tang (14392)

March 2018

Barcode-RT primer information, cell cycle gene list, and E-, M- and S-score gene list. (XLSX 18 kb

Additional file 1 of Peroxiredoxin II regulates exosome secretion from dermal mesenchymal stem cells through the ISGylation signaling pathway

Ying-Hao Han (16017092)
Ying-Ying Mao (480024)
Kyung Ho Lee (3207993)
Hee Jun Cho (2096500)
Nan-Nan Yu (11479800)
Xiao-Ya Xing (17263838)
Ai-Guo Wang (1502680)
Mei-Hua Jin (324210)
Kwan Soo Hong (474738)
Hu-Nan Sun (16017080)
Taeho Kwon (4845361)

October 2023

Additional file 1: Supplementary Fig 1. (A) Electron micrographs showing MVBs in Prx II+/+and Prx II...

Additional file 2: of A robust Pax7EGFP mouse that enables the visualization of dynamic behaviors of muscle stem cells

Elisia Tichy (5681717)
David Sidibe (5681720)
Christopher Greer (5681723)
Nicholas Oyster (5681726)
Panteleimon Rompolas (5681729)
Nadia Rosenthal (112318)
Helen Blau (764590)
Foteini Mourkioti (5681732)

August 2018

Figure S2. Pax7EGFP copy number variation analysis and in-depth genotyping, and effect of transgene ...

Additional file 1: of Epigenetic regulation of transcription factor promoter regions by low-dose genistein through mitogen-activated protein kinase and mitogen-and-stress activated kinase 1 nongenomic signaling

Linda Yu (1453492)
Kyle Ham (3447581)
Xiaohua Gao (3447578)
Lysandra Castro (3447572)
Yitang Yan (312121)
Grace Kissling (3447566)
Charles Tucker (3447584)
Norris Flagler (3447575)
Ray Dong (3447587)
Trevor Archer (455785)
Darlene Dixon (3447569)

August 2016

Colocalization of phosphorylated (Phospho-) MSK1 and H3S10ph in ht-UtLM cells treated with genistein...

Additional file 1: of Genomic analysis of transcriptional networks directing progression of cell states during MGE development

Abstract

Extracted data

Additional file 1: of Genomic analysis of transcriptional networks directing progression of cell states during MGE development

Abstract

Extracted data

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