Barcode-RT primer information, cell cycle gene list, and E-, M- and S-score gene list. (XLSX 18 kb
Table S1. Not1-site-containing transcripts in mouse. Table S2. Not1-site-containing transcripts in h...
Table S1. Sample meta-data and quality control characteristics per cell. a. iPS cells and endoderm, ...
A: Differential gene expression analysis with polysomal RNAseq. Cuffdiff summary including fold chan...
Figure S1. Quality control of the dataset and the characteristics of clusters. Figure S2. Interactio...
Table S2. Splicing rates per cell and tissue type. a. iPS cells, b. endoderm, c. mouse ES cells. (XL...
Figure S2. Concise description of the methodology and filtering methods used for the single-cell RNA...
Supplemental figures. Figure S1. Single-cell qPCR analysis of mouse fetal liver cells. Figure S2. Qu...
Table S1. Primer sequences of genes and miRNAs analyzed in RT-PCR or qRT-PCR. (PDF 99 kb
Top 50 marker genes expressed in 4366 sorted, fixed cells from mouse hindbrain and cerebellum. For e...
Single-cell data from mouse hindbrain are reproducible and correlate well with bulk mRNA-seq data. R...
Whole genome histogram of novel/existing variants in Gtf2ird1, Mecp2, Stc1, Itch, Sall2 and Hnrnpd/A...
Abstract Background Organogenesis is crucial for proper organ formation during mammalian embryonic d...
Metadata table for RNA-seq assay. File contains information on RNA-seq samples such as sample ID, se...
RNA-Seq gene counts. Listed are number of genes found and differentially expressed. The numbers of g...
Figure S4. Mouse reprogramming time course. As in Figure S3 but data is from mouse embryonic fibrobl...
Table S1. Not1-site-containing transcripts in mouse. Table S2. Not1-site-containing transcripts in h...
Table S1. Sample meta-data and quality control characteristics per cell. a. iPS cells and endoderm, ...
A: Differential gene expression analysis with polysomal RNAseq. Cuffdiff summary including fold chan...
Figure S1. Quality control of the dataset and the characteristics of clusters. Figure S2. Interactio...
Table S2. Splicing rates per cell and tissue type. a. iPS cells, b. endoderm, c. mouse ES cells. (XL...
Figure S2. Concise description of the methodology and filtering methods used for the single-cell RNA...
Supplemental figures. Figure S1. Single-cell qPCR analysis of mouse fetal liver cells. Figure S2. Qu...
Table S1. Primer sequences of genes and miRNAs analyzed in RT-PCR or qRT-PCR. (PDF 99 kb
Top 50 marker genes expressed in 4366 sorted, fixed cells from mouse hindbrain and cerebellum. For e...
Single-cell data from mouse hindbrain are reproducible and correlate well with bulk mRNA-seq data. R...
Whole genome histogram of novel/existing variants in Gtf2ird1, Mecp2, Stc1, Itch, Sall2 and Hnrnpd/A...
Abstract Background Organogenesis is crucial for proper organ formation during mammalian embryonic d...
Metadata table for RNA-seq assay. File contains information on RNA-seq samples such as sample ID, se...
RNA-Seq gene counts. Listed are number of genes found and differentially expressed. The numbers of g...
Figure S4. Mouse reprogramming time course. As in Figure S3 but data is from mouse embryonic fibrobl...
Table S1. Not1-site-containing transcripts in mouse. Table S2. Not1-site-containing transcripts in h...
Table S1. Sample meta-data and quality control characteristics per cell. a. iPS cells and endoderm, ...
A: Differential gene expression analysis with polysomal RNAseq. Cuffdiff summary including fold chan...
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