Additional file 2: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Additional file 5: of Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age

Kevin Johnson (684369)
E. Houseman (3398849)
Jessica King (430832)
Brock Christensen (3472082)

July 2017

Age-related DNA methylation in the human normal breast validated in adjacent-to-tumor normal breast ...

Additional file 1: of Exploring DNA methylation changes in promoter, intragenic, and intergenic regions as early and late events in breast cancer formation

Garth Rauscher (665932)
Jacob Kresovich (3530987)
Matthew Poulin (3530990)
Liying Yan (475923)
Virgilia Macias (3529991)
Abeer Mahmoud (665934)
Umaima Al-Alem (665931)
Andre Kajdacsy-Balla (2861)
Elizabeth Wiley (841098)
Debra Tonetti (3530993)
Melanie Ehrlich (49899)

October 2015

Table S1. “Promoter test region genes” and “Table S2. Non-promoter test region genes”. Two tables co...

Additional file 8 of Integrated analysis of DNA-methylation and gene expression using high-dimensional penalized regression: a cohort study on bone mineral density in postmenopausal women

Tonje Lien (4593184)
Ărnulf Borgan (4920787)
Sjur Reppe (152868)
Kaare Gautvik (580427)
Ingrid Glad (4920790)

March 2018

Figure S8. Distribution of p-values. The distribution of p-values from the âglobal testâ, when t...

Additional file 8: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

Set of 75 CpGs present in this study that are a subset of the 99 CpGs predictive of puberty status r...

Additional file 7: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

Significant networks of genes associated with female puberty-associated DMCs (from Ingenuity Pathway...

Additional file 1: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

Scatterplot illustrating correlation between methylation beta values in all samples (Nâ=â55 pair...

Additional file 6: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

List of genes near high affinity estrogen response elements near a female puberty-associated DMP gen...

Additional file 3: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

List of 48 differentially methylated probes in boys and girls, pre- and post-puberty (FDRâ=â5%)....

Additional file 5: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

List of 50 differentially methylated probes unique to boys, pre- and post-puberty (FDRâ=â5%). (X...

Additional file 2: of Methylome profiling of healthy and central precocious puberty girls

Danielle Bessa (6004520)
Mariana Maschietto (561649)
Carlos Aylwin (6004523)
Ana Canton (4861333)
Vinicius Brito (6004526)
Delanie Macedo (6004529)
Marina Cunha-Silva (6004532)
Heloísa Palhares (6004565)
Elisabete de Resende (6004538)
Maria de Fátima Borges (4628215)
Berenice Mendonca (6004544)
Irene Netchine (6004547)
Ana Krepischi (3513578)
Alejandro Lomniczi (6004550)
Sergio Ojeda (2847896)
Ana Latronico (6004559)

November 2018

Most significant transcription factors targeting differentially methylated genes between pre- and po...

Additional file 1: of Methylome profiling of healthy and central precocious puberty girls

Danielle Bessa (6004520)
Mariana Maschietto (561649)
Carlos Aylwin (6004523)
Ana Canton (4861333)
Vinicius Brito (6004526)
Delanie Macedo (6004529)
Marina Cunha-Silva (6004532)
Heloísa Palhares (6004565)
Elisabete de Resende (6004538)
Maria de Fátima Borges (4628215)
Berenice Mendonca (6004544)
Irene Netchine (6004547)
Ana Krepischi (3513578)
Alejandro Lomniczi (6004550)
Sergio Ojeda (2847896)
Ana Latronico (6004559)

November 2018

Gene ontology of the genes related to the top DMRs between pre- and post-pubertal healthy girls. (XL...

Additional file 2: of Associations of sex hormone-binding globulin and testosterone with genome-wide DNA methylation

Ryan Arathimos (3949622)
Gemma Sharp (4098775)
Raquel Granell (123318)
Kate Tilling (213507)
Caroline Relton (3457379)

December 2018

Table S1. EWAS results of total testosterone in childhood in males (P value< 0.005). Table S2. EWAS ...

Additional file 1: of Inverse association between estrogen receptor-α DNA methylation and breast composition in adolescent Chilean girls

Alexandra Binder (5054819)
Leah Stiemsma (5821721)
Kristen Keller (2109622)
Sanne van Otterdijk (230184)
Verónica Mericq (602580)
Ana Pereira (653754)
José Santos (770139)
John Shepherd (3459908)
Karin Michels (4968751)

October 2018

Figure S1. Correlation across CpG sites at B2 and B4 (Spearman rho = 0.65–98). Table S1: Primer sequ...

Additional file 2: of Sex differences in DNA methylation assessed by 450Â K BeadChip in newborns

Paul Yousefi (477969)
Karen Huen (207307)
Veronica DavĂŠ (3551951)
Lisa Barcellos (3551948)
Brenda Eskenazi (27323)
Nina Holland (409720)

November 2015

Visualization of enriched gene ontology categories. Gene ontology categories significantly enriched ...

Additional file 2: of MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data

Jingting Xu (3134982)
Shimeng Liu (6112952)
Ping Yin (54021)
Serdar Bulun (6112955)
Yang Dai (36730)

December 2018

Table S1. Pearson correlation coefficient of bin methylation level for the positive and negative DNA...

Additional file 5: of Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age

Kevin Johnson (684369)
E. Houseman (3398849)
Jessica King (430832)
Brock Christensen (3472082)

July 2017

Age-related DNA methylation in the human normal breast validated in adjacent-to-tumor normal breast ...

Additional file 1: of Exploring DNA methylation changes in promoter, intragenic, and intergenic regions as early and late events in breast cancer formation

Garth Rauscher (665932)
Jacob Kresovich (3530987)
Matthew Poulin (3530990)
Liying Yan (475923)
Virgilia Macias (3529991)
Abeer Mahmoud (665934)
Umaima Al-Alem (665931)
Andre Kajdacsy-Balla (2861)
Elizabeth Wiley (841098)
Debra Tonetti (3530993)
Melanie Ehrlich (49899)

October 2015

Table S1. “Promoter test region genes” and “Table S2. Non-promoter test region genes”. Two tables co...

Additional file 8 of Integrated analysis of DNA-methylation and gene expression using high-dimensional penalized regression: a cohort study on bone mineral density in postmenopausal women

Tonje Lien (4593184)
Ărnulf Borgan (4920787)
Sjur Reppe (152868)
Kaare Gautvik (580427)
Ingrid Glad (4920790)

March 2018

Figure S8. Distribution of p-values. The distribution of p-values from the âglobal testâ, when t...

Additional file 8: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

Set of 75 CpGs present in this study that are a subset of the 99 CpGs predictive of puberty status r...

Additional file 7: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

Significant networks of genes associated with female puberty-associated DMCs (from Ingenuity Pathway...

Additional file 1: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

Scatterplot illustrating correlation between methylation beta values in all samples (Nâ=â55 pair...

Additional file 6: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

List of genes near high affinity estrogen response elements near a female puberty-associated DMP gen...

Additional file 3: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

List of 48 differentially methylated probes in boys and girls, pre- and post-puberty (FDRâ=â5%)....

Additional file 5: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Emma Thompson (392865)
Jessie Nicodemus-Johnson (772733)
Kyung Kim (31555)
James Gern (3472670)
Daniel Jackson (176636)
Robert Lemanske (588802)
Carole Ober (259474)

May 2018

List of 50 differentially methylated probes unique to boys, pre- and post-puberty (FDRâ=â5%). (X...

Additional file 2: of Methylome profiling of healthy and central precocious puberty girls

Danielle Bessa (6004520)
Mariana Maschietto (561649)
Carlos Aylwin (6004523)
Ana Canton (4861333)
Vinicius Brito (6004526)
Delanie Macedo (6004529)
Marina Cunha-Silva (6004532)
Heloísa Palhares (6004565)
Elisabete de Resende (6004538)
Maria de Fátima Borges (4628215)
Berenice Mendonca (6004544)
Irene Netchine (6004547)
Ana Krepischi (3513578)
Alejandro Lomniczi (6004550)
Sergio Ojeda (2847896)
Ana Latronico (6004559)

November 2018

Most significant transcription factors targeting differentially methylated genes between pre- and po...

Additional file 1: of Methylome profiling of healthy and central precocious puberty girls

Danielle Bessa (6004520)
Mariana Maschietto (561649)
Carlos Aylwin (6004523)
Ana Canton (4861333)
Vinicius Brito (6004526)
Delanie Macedo (6004529)
Marina Cunha-Silva (6004532)
Heloísa Palhares (6004565)
Elisabete de Resende (6004538)
Maria de Fátima Borges (4628215)
Berenice Mendonca (6004544)
Irene Netchine (6004547)
Ana Krepischi (3513578)
Alejandro Lomniczi (6004550)
Sergio Ojeda (2847896)
Ana Latronico (6004559)

November 2018

Gene ontology of the genes related to the top DMRs between pre- and post-pubertal healthy girls. (XL...

Additional file 2: of Associations of sex hormone-binding globulin and testosterone with genome-wide DNA methylation

Ryan Arathimos (3949622)
Gemma Sharp (4098775)
Raquel Granell (123318)
Kate Tilling (213507)
Caroline Relton (3457379)

December 2018

Table S1. EWAS results of total testosterone in childhood in males (P value< 0.005). Table S2. EWAS ...

Additional file 1: of Inverse association between estrogen receptor-α DNA methylation and breast composition in adolescent Chilean girls

Alexandra Binder (5054819)
Leah Stiemsma (5821721)
Kristen Keller (2109622)
Sanne van Otterdijk (230184)
Verónica Mericq (602580)
Ana Pereira (653754)
José Santos (770139)
John Shepherd (3459908)
Karin Michels (4968751)

October 2018

Figure S1. Correlation across CpG sites at B2 and B4 (Spearman rho = 0.65–98). Table S1: Primer sequ...

Additional file 2: of Sex differences in DNA methylation assessed by 450Â K BeadChip in newborns

Paul Yousefi (477969)
Karen Huen (207307)
Veronica DavĂŠ (3551951)
Lisa Barcellos (3551948)
Brenda Eskenazi (27323)
Nina Holland (409720)

November 2015

Visualization of enriched gene ontology categories. Gene ontology categories significantly enriched ...

Additional file 2: of MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data

Jingting Xu (3134982)
Shimeng Liu (6112952)
Ping Yin (54021)
Serdar Bulun (6112955)
Yang Dai (36730)

December 2018

Table S1. Pearson correlation coefficient of bin methylation level for the positive and negative DNA...

Additional file 5: of Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age

Kevin Johnson (684369)
E. Houseman (3398849)
Jessica King (430832)
Brock Christensen (3472082)

July 2017

Age-related DNA methylation in the human normal breast validated in adjacent-to-tumor normal breast ...

Additional file 1: of Exploring DNA methylation changes in promoter, intragenic, and intergenic regions as early and late events in breast cancer formation

Garth Rauscher (665932)
Jacob Kresovich (3530987)
Matthew Poulin (3530990)
Liying Yan (475923)
Virgilia Macias (3529991)
Abeer Mahmoud (665934)
Umaima Al-Alem (665931)
Andre Kajdacsy-Balla (2861)
Elizabeth Wiley (841098)
Debra Tonetti (3530993)
Melanie Ehrlich (49899)

October 2015

Table S1. “Promoter test region genes” and “Table S2. Non-promoter test region genes”. Two tables co...

Additional file 8 of Integrated analysis of DNA-methylation and gene expression using high-dimensional penalized regression: a cohort study on bone mineral density in postmenopausal women

Tonje Lien (4593184)
Ărnulf Borgan (4920787)
Sjur Reppe (152868)
Kaare Gautvik (580427)
Ingrid Glad (4920790)

March 2018

Figure S8. Distribution of p-values. The distribution of p-values from the âglobal testâ, when t...

Additional file 2: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Abstract

Extracted data

Additional file 2: of Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes

Abstract

Extracted data

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