Figure S2. Dirichlet-Multinomial diagnostics including species level OTU relative abundance for each sample and CST. Panels AâC show the sqrt-transformed relative abundance for each sample, clustered into its CST group. OTUs were selected to have the largest between CST-variance. Sites have varying OTU depending if a taxa was present at a site. Thicker boxes to the right of the thin white lines show the Dirichlet-Multinomial parameter for the CST and OTU. Panel D shows the average abundance of selected genera across CST and body sites. Rows are z-scored. (PDF 719 kb
Comparison of relative abundances of different genera detected in milk between preterm and term samp...
Figure S2. Robustness of the winner prevalence estimate to different cutoffs. Bar plots show how the...
Figure S9. Distribution of correlations of OTU shared in common between body sites. PMA and a subjec...
Table S1. Genus level table indicating the average relative abundances of all taxa in each community...
Figure S1. Composition bar charts by subject and sampling method. Figure S2. Alpha diversity by subj...
Five most abundant genera in human milk. Each point on the graph represents a subject, which indicat...
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
Figure S3. Goodness of fit for Dirichlet multinomial mixture models in 80% subsamples of data in gut...
Figure S7. Visualizations of models relating CST occurrence probability to post-natal and gestationa...
Figure S3. Number of OTUs and abundance of the genera that were analyze in Fig. 1. The left panel il...
Confusion table of phases vs. Dirichlet multinomial mixture components. Each sample was classified a...
Figure S4. Distribution of within-group abundances for all genera when considering only the three mo...
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Comparison of the effect of OTU picking method on the proportion of OTUs cultured. Figure S2 Compari...
File includes Figure A, B, and C. Figure A. Rarefaction curve. Number of observed species identified...
Comparison of relative abundances of different genera detected in milk between preterm and term samp...
Figure S2. Robustness of the winner prevalence estimate to different cutoffs. Bar plots show how the...
Figure S9. Distribution of correlations of OTU shared in common between body sites. PMA and a subjec...
Table S1. Genus level table indicating the average relative abundances of all taxa in each community...
Figure S1. Composition bar charts by subject and sampling method. Figure S2. Alpha diversity by subj...
Five most abundant genera in human milk. Each point on the graph represents a subject, which indicat...
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
Figure S3. Goodness of fit for Dirichlet multinomial mixture models in 80% subsamples of data in gut...
Figure S7. Visualizations of models relating CST occurrence probability to post-natal and gestationa...
Figure S3. Number of OTUs and abundance of the genera that were analyze in Fig. 1. The left panel il...
Confusion table of phases vs. Dirichlet multinomial mixture components. Each sample was classified a...
Figure S4. Distribution of within-group abundances for all genera when considering only the three mo...
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Comparison of the effect of OTU picking method on the proportion of OTUs cultured. Figure S2 Compari...
File includes Figure A, B, and C. Figure A. Rarefaction curve. Number of observed species identified...
Comparison of relative abundances of different genera detected in milk between preterm and term samp...
Figure S2. Robustness of the winner prevalence estimate to different cutoffs. Bar plots show how the...
Figure S9. Distribution of correlations of OTU shared in common between body sites. PMA and a subjec...