Figure S1. Composition bar charts by subject and sampling method. Figure S2. Alpha diversity by subject and sampling method observed OTUs. Figure S3. Number of Dirichlet components vs. model fit. Figure S4. Weighted UniFrac Principal Coordinate Analyses of phase and Dirichlet component. (A) Weighted UniFrac Principal Coordinate Analysis plot colored by phase. (B) Weighted UniFrac Principal Coordinate Analysis plot colored by Dirichlet Component. Figure S5. Total functional variance based on the fitted microbiome abundance at the species level relative to postmenstrual age (PMA). Figure S6. Linear regression analysis of meconium samples and Phase 1 rectal samples. Comment on Figure 3F. (DOCX 1141Â kb
Figure S2. Stacked bar plot of dominant genera. Marginal and representative sections from each infan...
Figure S4. The environmental microbiota of preterm and full-term infants. A. Relative abundance of t...
Figure S7. Visualizations of models relating CST occurrence probability to post-natal and gestationa...
Linear regression analysis of significant taxa for two variables (genera in P1 and genera in meconiu...
Confusion table of phases vs. Dirichlet multinomial mixture components. Each sample was classified a...
Number of significant associations identified in the initial linear mixed-effects regression analysi...
Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...
AâB. Full results of mixed-effects logistic regression for nutrition and medication. (DOCX 14Â kb
Comparison of microbiota profiles in NEC and control infants subgrouped by diet. Observed species (o...
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Per sample key metadata parameters. Table S2. Per sample Shannon diversity indices. Table S3. Mean t...
Figure S2. Dirichlet-Multinomial diagnostics including species level OTU relative abundance for each...
Additional file 1: Supplemental Figure 1. Overall longitudinal microbiome composition. (A) Compositi...
Fecal sample community composition. Plotted in each panel is the community composition of each infan...
Logistic mixed model regression analysis for examining the effect of time from birth on bacterial ge...
Figure S2. Stacked bar plot of dominant genera. Marginal and representative sections from each infan...
Figure S4. The environmental microbiota of preterm and full-term infants. A. Relative abundance of t...
Figure S7. Visualizations of models relating CST occurrence probability to post-natal and gestationa...
Linear regression analysis of significant taxa for two variables (genera in P1 and genera in meconiu...
Confusion table of phases vs. Dirichlet multinomial mixture components. Each sample was classified a...
Number of significant associations identified in the initial linear mixed-effects regression analysi...
Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...
AâB. Full results of mixed-effects logistic regression for nutrition and medication. (DOCX 14Â kb
Comparison of microbiota profiles in NEC and control infants subgrouped by diet. Observed species (o...
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Per sample key metadata parameters. Table S2. Per sample Shannon diversity indices. Table S3. Mean t...
Figure S2. Dirichlet-Multinomial diagnostics including species level OTU relative abundance for each...
Additional file 1: Supplemental Figure 1. Overall longitudinal microbiome composition. (A) Compositi...
Fecal sample community composition. Plotted in each panel is the community composition of each infan...
Logistic mixed model regression analysis for examining the effect of time from birth on bacterial ge...
Figure S2. Stacked bar plot of dominant genera. Marginal and representative sections from each infan...
Figure S4. The environmental microbiota of preterm and full-term infants. A. Relative abundance of t...
Figure S7. Visualizations of models relating CST occurrence probability to post-natal and gestationa...