Input files necessary to replicate ipyrad assembly and relevant ipyrad output files
ddRAD sequence assembly in vcf and structure format, and pyRAD sequence assembly parameters file
Supplementary Computer Code from Hoyal Cuthill et al 2019 Science Advances containing the Python scr...
These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 gen...
Input files necessary to replicate ipyrad assembly and relevant ipyrad output files
IPYRAD parameters file used for processing data files; Loci must be shared by a minimum of 4 taxa to...
IPYRAD parameters file used for processing data files; Loci must be shared by a minimum of 35 taxa t...
File includes the ipyrad parameter specifications used to process the Illumina sequencing reads of C...
The file contains the nine parameter files used by ipyrad to generate all data matrices for downstre...
Argy-HHS-demuliplexed-GBS-data.tar.gz contains demultiplexed reads for the samples used in this stud...
This file contains the data matrix from the 90% similarity threshold including 75% of individuals us...
This is the parameter file containing all parameters used for de novo SNP calling using the pyRAD pi...
This is the final cleaned and filtered VCF file output from the program ipyrad for our data (https:/...
A document which provides users with a general explanation of the different IPM output files that ar...
This file is an aggregation of affiliation data for each person. It is part of the output of the IPy...
Input and output files of ISDAC LES intercomparison (Ovchinnikov et al., 2014) using PyCLES (Pressel...
ddRAD sequence assembly in vcf and structure format, and pyRAD sequence assembly parameters file
Supplementary Computer Code from Hoyal Cuthill et al 2019 Science Advances containing the Python scr...
These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 gen...
Input files necessary to replicate ipyrad assembly and relevant ipyrad output files
IPYRAD parameters file used for processing data files; Loci must be shared by a minimum of 4 taxa to...
IPYRAD parameters file used for processing data files; Loci must be shared by a minimum of 35 taxa t...
File includes the ipyrad parameter specifications used to process the Illumina sequencing reads of C...
The file contains the nine parameter files used by ipyrad to generate all data matrices for downstre...
Argy-HHS-demuliplexed-GBS-data.tar.gz contains demultiplexed reads for the samples used in this stud...
This file contains the data matrix from the 90% similarity threshold including 75% of individuals us...
This is the parameter file containing all parameters used for de novo SNP calling using the pyRAD pi...
This is the final cleaned and filtered VCF file output from the program ipyrad for our data (https:/...
A document which provides users with a general explanation of the different IPM output files that ar...
This file is an aggregation of affiliation data for each person. It is part of the output of the IPy...
Input and output files of ISDAC LES intercomparison (Ovchinnikov et al., 2014) using PyCLES (Pressel...
ddRAD sequence assembly in vcf and structure format, and pyRAD sequence assembly parameters file
Supplementary Computer Code from Hoyal Cuthill et al 2019 Science Advances containing the Python scr...
These files contain next-generation sequencing data (sequencer: Ion Torrent PGM) aligned to hg19 gen...
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