ddRAD sequence assembly in vcf and structure format, and pyRAD sequence assembly parameters file
Final STACKS assembly. Includes two population maps: 1) all samples; 2) samples with low missing dat...
Phylip-style (sequential) multiple alignment file, generated from pyRAD loci d6m10 file
This file contains all of the inputs used for the five different structure analyses. The input files...
ddRAD sequence assembly in vcf and structure format, and pyRAD sequence assembly parameters file
Contains data and scripts of the section *Sequencing output, de novo assembly and loci filtering of ...
File S1. VCF file with SNPs from BL3 WGS aligned to the bovine UMD3.1 reference assembl
This is the parameter file containing all parameters used for de novo SNP calling using the pyRAD pi...
This file contains individual files with forward (*.1.fq.gz) and reverse (*.2.fq.gz) RAD-sequencing ...
A vcf file containing all individuals, both sdRADseq and ddRADseq, when analyzed together using stac...
This file is the output of the pyRAD pipeline (VCF format) ran on the raw sequence reads (accessible...
Directory containing the GATK output .vcf file from denovo-assembled reads of A. ndalalani. Director...
ddRAD sequences for the Sarcohyla bistincta species complex: Sarcohyla bistincta, Sarcohyla calthula...
Variant Call File from the samtools analysis on 60 ddRAD-seq individuals and 60 sdRAD-seq individual...
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4D
The file contains the plasmid sequences of pLVK3, pLVSK4, pTmcherryK4, pTN001, and pTN002
Final STACKS assembly. Includes two population maps: 1) all samples; 2) samples with low missing dat...
Phylip-style (sequential) multiple alignment file, generated from pyRAD loci d6m10 file
This file contains all of the inputs used for the five different structure analyses. The input files...
ddRAD sequence assembly in vcf and structure format, and pyRAD sequence assembly parameters file
Contains data and scripts of the section *Sequencing output, de novo assembly and loci filtering of ...
File S1. VCF file with SNPs from BL3 WGS aligned to the bovine UMD3.1 reference assembl
This is the parameter file containing all parameters used for de novo SNP calling using the pyRAD pi...
This file contains individual files with forward (*.1.fq.gz) and reverse (*.2.fq.gz) RAD-sequencing ...
A vcf file containing all individuals, both sdRADseq and ddRADseq, when analyzed together using stac...
This file is the output of the pyRAD pipeline (VCF format) ran on the raw sequence reads (accessible...
Directory containing the GATK output .vcf file from denovo-assembled reads of A. ndalalani. Director...
ddRAD sequences for the Sarcohyla bistincta species complex: Sarcohyla bistincta, Sarcohyla calthula...
Variant Call File from the samtools analysis on 60 ddRAD-seq individuals and 60 sdRAD-seq individual...
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4D
The file contains the plasmid sequences of pLVK3, pLVSK4, pTmcherryK4, pTN001, and pTN002
Final STACKS assembly. Includes two population maps: 1) all samples; 2) samples with low missing dat...
Phylip-style (sequential) multiple alignment file, generated from pyRAD loci d6m10 file
This file contains all of the inputs used for the five different structure analyses. The input files...
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