This is the parameter file containing all parameters used for de novo SNP calling using the pyRAD pipeline. Running pyRAD using these parameters on the deposited raw data (accessible in GenBank BioProject PRJNA382467) will produce the "FL-RAD-SphI-ALL.vcf" and "FL-RAD-SphI-ALL.loci" files deposited in this repositiory
The file contains the nine parameter files used by ipyrad to generate all data matrices for downstre...
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4A
vcf file of the SNP calling from RADseq data (B. tabaci species complex) mapped to the B. tabaci MEA...
This file contains the Pyrad parameters file that was used to create the SNP dataset that was used (...
This file is the output of the pyRAD pipeline (pyRAD ".loci" format) ran on the raw sequence reads (...
This file is the output of the pyRAD pipeline (VCF format) ran on the raw sequence reads (accessible...
A folder containing the .loci file with genomic data and three parameter files to recreate partition...
IPYRAD parameters file used for processing data files; Loci must be shared by a minimum of 4 taxa to...
IPYRAD parameters file used for processing data files; Loci must be shared by a minimum of 35 taxa t...
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4D
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4B
VCF, structure format files, and phased allele files from pyrad; construct analysis inputs; Maxent p...
.zip archive contains all pyRAD parameter files used to generate the 85, 90, 95% similarity threshol...
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4C) and to ca...
Loci file exported from clustering analysis performed in PyRAD. All molecular datasets referenced in...
The file contains the nine parameter files used by ipyrad to generate all data matrices for downstre...
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4A
vcf file of the SNP calling from RADseq data (B. tabaci species complex) mapped to the B. tabaci MEA...
This file contains the Pyrad parameters file that was used to create the SNP dataset that was used (...
This file is the output of the pyRAD pipeline (pyRAD ".loci" format) ran on the raw sequence reads (...
This file is the output of the pyRAD pipeline (VCF format) ran on the raw sequence reads (accessible...
A folder containing the .loci file with genomic data and three parameter files to recreate partition...
IPYRAD parameters file used for processing data files; Loci must be shared by a minimum of 4 taxa to...
IPYRAD parameters file used for processing data files; Loci must be shared by a minimum of 35 taxa t...
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4D
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4B
VCF, structure format files, and phased allele files from pyrad; construct analysis inputs; Maxent p...
.zip archive contains all pyRAD parameter files used to generate the 85, 90, 95% similarity threshol...
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4C) and to ca...
Loci file exported from clustering analysis performed in PyRAD. All molecular datasets referenced in...
The file contains the nine parameter files used by ipyrad to generate all data matrices for downstre...
VCF file (output from pyRAD) used to calculate nucleotide diversity in VCFTools (Fig. S4A
vcf file of the SNP calling from RADseq data (B. tabaci species complex) mapped to the B. tabaci MEA...
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