Additional file 2: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Additional file 3: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

Md Islam (257385)
David Fang (3399707)
Gregory Thyssen (531000)
Chris Delhom (2290288)
Yongliang Liu (561185)
Hee Kim (2025640)

February 2016

Differentially expressed genes at 20 DPA between MD52ne and MD90ne. This table contains 1080 allotet...

Additional file 9: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S4. Frequency distribution of phenotypic variation of 15 agronomic traits and correlation coe...

Additional file 3: Table S2. of Fine mapping and RNA-Seq unravels candidate genes for a major QTL controlling multiple fiber quality traits at the T1 region in upland cotton

Dexin Liu (138735)
Jian Zhang (1682)
Xueying Liu (344877)
Wenwen Wang (534041)
Dajun Liu (111263)
Zhonghua Teng (531125)
Xiaomei Fang (1662148)
Zhaoyun Tan (3487865)
Shiyi Tang (3487862)
Jinghong Yang (3487868)
Jianwei Zhong (329148)
Zhengsheng Zhang (3487871)

April 2016

Phenotypic variation of fiber quality traits in 1434Â F2 population. (XLSX 11Â kb

Additional file 1: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S1. List of 83 upland accessions used for association mapping. P1 and P2 indicate the 83 uplan...

Additional file 7: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S5. Correlation coefficients between SNP markers and FL at maturity in CRI36 × Hai 7124 BILs. ...

Additional file 10: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Figure S5. Transcription profiles of differences in gene expression in fibers at 10 DPA between long...

Additional file 9: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S6.. KEGG analysis of all candidate genes associated with dynamic fiber length. (XLSX 14âkb

Additional file 6: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S4. Genotype polymorphism of candidate SNPs between CRI36 and Hai 7124 and the primers used fo...

Additional file 4: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S3. Performance of backcross inbred lines (BILs) of Hai7124 × CRI36 hybrids and their parents....

Additional file 1: Table S1. of Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton

Xihua Li (148840)
Man Wu (176916)
Guoyuan Liu (3860371)
Wenfeng Pei (843644)
Honghong Zhai (799135)
Jiwen Yu (534751)
Jinfa Zhang (121196)
Shuxun Yu (89036)

May 2017

Average fiber quality of the two BILs tested in different environments based on Yu et al. [37]. (DOC...

Additional file 2: Figure S1. of Fine mapping and RNA-Seq unravels candidate genes for a major QTL controlling multiple fiber quality traits at the T1 region in upland cotton

Dexin Liu (138735)
Jian Zhang (1682)
Xueying Liu (344877)
Wenwen Wang (534041)
Dajun Liu (111263)
Zhonghua Teng (531125)
Xiaomei Fang (1662148)
Zhaoyun Tan (3487865)
Shiyi Tang (3487862)
Jinghong Yang (3487868)
Jianwei Zhong (329148)
Zhengsheng Zhang (3487871)

April 2016

The frequency distribution of five fiber quality traits in 1434-individual F2 population in 2011. (D...

Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma
Yanhui Geng
Wenfeng Pei
Man Wu
Xingli Li
Guoyuan Liu
Dan Li
Qifeng Ma
XinShan Zang
Shuxun Yu
Jinfa Zhang
Jiwen Yu

December 2018

Abstract Background In upland cotton (Gossypium hirsutum L.), genotypes with the same mature fiber l...

Additional file 2: of A high density SLAF-SNP genetic map and QTL detection for fibre quality traits in Gossypium hirsutum

Iftikhar Ali (185774)
Zhonghua Teng (531125)
Yuting Bai (3428096)
Qing Yang (67856)
Yongshui Hao (6059186)
Juan Hou (34052)
Yongbin Jia (6059189)
Lixia Tian (383098)
Xueying Liu (344877)
Zhaoyun Tan (3487865)
Wenwen Wang (534041)
Kiirya Kenneth (6059192)
Abdalla Sharkh (6059195)
Dexin Liu (138735)
Kai Guo (54091)
Jian Zhang (1682)
Dajun Liu (111263)
Zhengsheng Zhang (3487871)

December 2018

Table S2. QTL for fiber quality in RIL population in three environments (XLSX 20 kb

Additional file 11: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S6. Physical map of 278 markers associated with 15 agronomic traits in 419 accessions. The lo...

Additional file 12: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S7. Allele distribution of 11 fiber-yield and quality traits and favorable alleles found in 4...

Additional file 3: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

Md Islam (257385)
David Fang (3399707)
Gregory Thyssen (531000)
Chris Delhom (2290288)
Yongliang Liu (561185)
Hee Kim (2025640)

February 2016

Differentially expressed genes at 20 DPA between MD52ne and MD90ne. This table contains 1080 allotet...

Additional file 9: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S4. Frequency distribution of phenotypic variation of 15 agronomic traits and correlation coe...

Additional file 3: Table S2. of Fine mapping and RNA-Seq unravels candidate genes for a major QTL controlling multiple fiber quality traits at the T1 region in upland cotton

Dexin Liu (138735)
Jian Zhang (1682)
Xueying Liu (344877)
Wenwen Wang (534041)
Dajun Liu (111263)
Zhonghua Teng (531125)
Xiaomei Fang (1662148)
Zhaoyun Tan (3487865)
Shiyi Tang (3487862)
Jinghong Yang (3487868)
Jianwei Zhong (329148)
Zhengsheng Zhang (3487871)

April 2016

Phenotypic variation of fiber quality traits in 1434Â F2 population. (XLSX 11Â kb

Additional file 1: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S1. List of 83 upland accessions used for association mapping. P1 and P2 indicate the 83 uplan...

Additional file 7: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S5. Correlation coefficients between SNP markers and FL at maturity in CRI36 × Hai 7124 BILs. ...

Additional file 10: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Figure S5. Transcription profiles of differences in gene expression in fibers at 10 DPA between long...

Additional file 9: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S6.. KEGG analysis of all candidate genes associated with dynamic fiber length. (XLSX 14âkb

Additional file 6: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S4. Genotype polymorphism of candidate SNPs between CRI36 and Hai 7124 and the primers used fo...

Additional file 4: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S3. Performance of backcross inbred lines (BILs) of Hai7124 × CRI36 hybrids and their parents....

Additional file 1: Table S1. of Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton

Xihua Li (148840)
Man Wu (176916)
Guoyuan Liu (3860371)
Wenfeng Pei (843644)
Honghong Zhai (799135)
Jiwen Yu (534751)
Jinfa Zhang (121196)
Shuxun Yu (89036)

May 2017

Average fiber quality of the two BILs tested in different environments based on Yu et al. [37]. (DOC...

Additional file 2: Figure S1. of Fine mapping and RNA-Seq unravels candidate genes for a major QTL controlling multiple fiber quality traits at the T1 region in upland cotton

Dexin Liu (138735)
Jian Zhang (1682)
Xueying Liu (344877)
Wenwen Wang (534041)
Dajun Liu (111263)
Zhonghua Teng (531125)
Xiaomei Fang (1662148)
Zhaoyun Tan (3487865)
Shiyi Tang (3487862)
Jinghong Yang (3487868)
Jianwei Zhong (329148)
Zhengsheng Zhang (3487871)

April 2016

The frequency distribution of five fiber quality traits in 1434-individual F2 population in 2011. (D...

Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma
Yanhui Geng
Wenfeng Pei
Man Wu
Xingli Li
Guoyuan Liu
Dan Li
Qifeng Ma
XinShan Zang
Shuxun Yu
Jinfa Zhang
Jiwen Yu

December 2018

Abstract Background In upland cotton (Gossypium hirsutum L.), genotypes with the same mature fiber l...

Additional file 2: of A high density SLAF-SNP genetic map and QTL detection for fibre quality traits in Gossypium hirsutum

Iftikhar Ali (185774)
Zhonghua Teng (531125)
Yuting Bai (3428096)
Qing Yang (67856)
Yongshui Hao (6059186)
Juan Hou (34052)
Yongbin Jia (6059189)
Lixia Tian (383098)
Xueying Liu (344877)
Zhaoyun Tan (3487865)
Wenwen Wang (534041)
Kiirya Kenneth (6059192)
Abdalla Sharkh (6059195)
Dexin Liu (138735)
Kai Guo (54091)
Jian Zhang (1682)
Dajun Liu (111263)
Zhengsheng Zhang (3487871)

December 2018

Table S2. QTL for fiber quality in RIL population in three environments (XLSX 20 kb

Additional file 11: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S6. Physical map of 278 markers associated with 15 agronomic traits in 419 accessions. The lo...

Additional file 12: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S7. Allele distribution of 11 fiber-yield and quality traits and favorable alleles found in 4...

Additional file 3: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

Md Islam (257385)
David Fang (3399707)
Gregory Thyssen (531000)
Chris Delhom (2290288)
Yongliang Liu (561185)
Hee Kim (2025640)

February 2016

Differentially expressed genes at 20 DPA between MD52ne and MD90ne. This table contains 1080 allotet...

Additional file 9: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S4. Frequency distribution of phenotypic variation of 15 agronomic traits and correlation coe...

Additional file 3: Table S2. of Fine mapping and RNA-Seq unravels candidate genes for a major QTL controlling multiple fiber quality traits at the T1 region in upland cotton

Dexin Liu (138735)
Jian Zhang (1682)
Xueying Liu (344877)
Wenwen Wang (534041)
Dajun Liu (111263)
Zhonghua Teng (531125)
Xiaomei Fang (1662148)
Zhaoyun Tan (3487865)
Shiyi Tang (3487862)
Jinghong Yang (3487868)
Jianwei Zhong (329148)
Zhengsheng Zhang (3487871)

April 2016

Phenotypic variation of fiber quality traits in 1434Â F2 population. (XLSX 11Â kb

Additional file 2: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Abstract

Extracted data

Additional file 2: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Abstract

Extracted data

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