Additional file 4: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Additional file 2: of Genetic basis of heterosis for yield and yield components explored by QTL mapping across four genetic populations in upland cotton

Cong Li (115171)
Tianlun Zhao (5855069)
Hurong Yu (5855066)
Cheng Li (6339)
Xiaolei Deng (5855072)
Yating Dong (4017506)
Fan Zhang (46132)
Yi Zhang (9093)
Lei Mei (1308327)
Jinhong Chen (396617)
Shuijin Zhu (317144)

December 2018

Table S2. HB of RILs and MPH percentage of yield and yield components across four environments. (PDF...

Additional file 11: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S6. Physical map of 278 markers associated with 15 agronomic traits in 419 accessions. The lo...

Additional file 1: Table S1. of Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton

Xihua Li (148840)
Man Wu (176916)
Guoyuan Liu (3860371)
Wenfeng Pei (843644)
Honghong Zhai (799135)
Jiwen Yu (534751)
Jinfa Zhang (121196)
Shuxun Yu (89036)

May 2017

Average fiber quality of the two BILs tested in different environments based on Yu et al. [37]. (DOC...

Additional file 7: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S5. Correlation coefficients between SNP markers and FL at maturity in CRI36 × Hai 7124 BILs. ...

Additional file 9: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S6.. KEGG analysis of all candidate genes associated with dynamic fiber length. (XLSX 14âkb

Additional file 6: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S4. Genotype polymorphism of candidate SNPs between CRI36 and Hai 7124 and the primers used fo...

Additional file 1: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S1. List of 83 upland accessions used for association mapping. P1 and P2 indicate the 83 uplan...

Additional file 2: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Figure S1.. Frequency map of dynamic fiber length in upland cotton in different environments. (a) Fi...

Additional file 10: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Figure S5. Transcription profiles of differences in gene expression in fibers at 10 DPA between long...

Additional file 1: of Genetic basis of heterosis for yield and yield components explored by QTL mapping across four genetic populations in upland cotton

Cong Li (115171)
Tianlun Zhao (5855069)
Hurong Yu (5855066)
Cheng Li (6339)
Xiaolei Deng (5855072)
Yating Dong (4017506)
Fan Zhang (46132)
Yi Zhang (9093)
Lei Mei (1308327)
Jinhong Chen (396617)
Shuijin Zhu (317144)

December 2018

Table S1. Phenotypic variation of yield and yield components for the parents (PDF 105âkb

Additional file 3: of Genetic basis of heterosis for yield and yield components explored by QTL mapping across four genetic populations in upland cotton

Cong Li (115171)
Tianlun Zhao (5855069)
Hurong Yu (5855066)
Cheng Li (6339)
Xiaolei Deng (5855072)
Yating Dong (4017506)
Fan Zhang (46132)
Yi Zhang (9093)
Lei Mei (1308327)
Jinhong Chen (396617)
Shuijin Zhu (317144)

December 2018

Table S3. Average MPH of 20 top high-heterosis hybrids of yield and yield components. (PDF 100âkb

Additional file 4: of Genetic basis of heterosis for yield and yield components explored by QTL mapping across four genetic populations in upland cotton

Cong Li (115171)
Tianlun Zhao (5855069)
Hurong Yu (5855066)
Cheng Li (6339)
Xiaolei Deng (5855072)
Yating Dong (4017506)
Fan Zhang (46132)
Yi Zhang (9093)
Lei Mei (1308327)
Jinhong Chen (396617)
Shuijin Zhu (317144)

December 2018

Table S4. Correlations between yield and yield components estimated in the RIL, IF2, and two BCF1 po...

Additional file 3: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

Muhammad Jamshed (1892518)
Fei Jia (688426)
Juwu Gong (781989)
Koffi Palanga (3467450)
Yuzhen Shi (781988)
Junwen Li (781986)
Haihong Shang (781990)
Aiying Liu (301366)
Tingting Chen (111216)
Zhen Zhang (86004)
Juan Cai (470988)
Qun Ge (781991)
Zhi Liu (165121)
Quanwei Lu (781993)
Xiaoying Deng (781994)
Yunna Tan (781995)
Harun or Rashid (3559178)
Zareen Sarfraz (3559172)
Murtaza Hassan (3559175)
Wankui Gong (781997)
Youlu Yuan (688107)

March 2016

Position and markers details of identified QTLs for fiber quality traits in an intraspecific RIL. (X...

Additional file 4: of Genetic and transcriptomic dissection of the fiber length trait from a cotton (Gossypium hirsutum L.) MAGIC population

Marina Naoumkina (40666)
Gregory Thyssen (531000)
David Fang (3399707)
Johnie Jenkins (3407099)
Jack McCarty (3407090)
Christopher Florane (531001)

February 2019

Analysis of the boundaries of the D11:24-Mb UHML locus. (PDF 1104âkb) (A) GWAS Manhattan plot of C...

Additional file 6: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

Muhammad Jamshed (1892518)
Fei Jia (688426)
Juwu Gong (781989)
Koffi Palanga (3467450)
Yuzhen Shi (781988)
Junwen Li (781986)
Haihong Shang (781990)
Aiying Liu (301366)
Tingting Chen (111216)
Zhen Zhang (86004)
Juan Cai (470988)
Qun Ge (781991)
Zhi Liu (165121)
Quanwei Lu (781993)
Xiaoying Deng (781994)
Yunna Tan (781995)
Harun or Rashid (3559178)
Zareen Sarfraz (3559172)
Murtaza Hassan (3559175)
Wankui Gong (781997)
Youlu Yuan (688107)

March 2016

Identified QTLs for fiber traits in a RIL and comparison with the findings of previous reports. (XLS...

Additional file 2: of Genetic basis of heterosis for yield and yield components explored by QTL mapping across four genetic populations in upland cotton

Cong Li (115171)
Tianlun Zhao (5855069)
Hurong Yu (5855066)
Cheng Li (6339)
Xiaolei Deng (5855072)
Yating Dong (4017506)
Fan Zhang (46132)
Yi Zhang (9093)
Lei Mei (1308327)
Jinhong Chen (396617)
Shuijin Zhu (317144)

December 2018

Table S2. HB of RILs and MPH percentage of yield and yield components across four environments. (PDF...

Additional file 11: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S6. Physical map of 278 markers associated with 15 agronomic traits in 419 accessions. The lo...

Additional file 1: Table S1. of Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton

Xihua Li (148840)
Man Wu (176916)
Guoyuan Liu (3860371)
Wenfeng Pei (843644)
Honghong Zhai (799135)
Jiwen Yu (534751)
Jinfa Zhang (121196)
Shuxun Yu (89036)

May 2017

Average fiber quality of the two BILs tested in different environments based on Yu et al. [37]. (DOC...

Additional file 7: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S5. Correlation coefficients between SNP markers and FL at maturity in CRI36 × Hai 7124 BILs. ...

Additional file 9: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S6.. KEGG analysis of all candidate genes associated with dynamic fiber length. (XLSX 14âkb

Additional file 6: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S4. Genotype polymorphism of candidate SNPs between CRI36 and Hai 7124 and the primers used fo...

Additional file 1: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Table S1. List of 83 upland accessions used for association mapping. P1 and P2 indicate the 83 uplan...

Additional file 2: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Figure S1.. Frequency map of dynamic fiber length in upland cotton in different environments. (a) Fi...

Additional file 10: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Jianjiang Ma (3807421)
Yanhui Geng (4530784)
Wenfeng Pei (843644)
Man Wu (176916)
Xingli Li (736261)
Guoyuan Liu (3860371)
Dan Li (106345)
Qifeng Ma (534752)
XinShan Zang (6059306)
Shuxun Yu (89036)
Jinfa Zhang (121196)
Jiwen Yu (534751)

December 2018

Figure S5. Transcription profiles of differences in gene expression in fibers at 10 DPA between long...

Additional file 1: of Genetic basis of heterosis for yield and yield components explored by QTL mapping across four genetic populations in upland cotton

Cong Li (115171)
Tianlun Zhao (5855069)
Hurong Yu (5855066)
Cheng Li (6339)
Xiaolei Deng (5855072)
Yating Dong (4017506)
Fan Zhang (46132)
Yi Zhang (9093)
Lei Mei (1308327)
Jinhong Chen (396617)
Shuijin Zhu (317144)

December 2018

Table S1. Phenotypic variation of yield and yield components for the parents (PDF 105âkb

Additional file 3: of Genetic basis of heterosis for yield and yield components explored by QTL mapping across four genetic populations in upland cotton

Cong Li (115171)
Tianlun Zhao (5855069)
Hurong Yu (5855066)
Cheng Li (6339)
Xiaolei Deng (5855072)
Yating Dong (4017506)
Fan Zhang (46132)
Yi Zhang (9093)
Lei Mei (1308327)
Jinhong Chen (396617)
Shuijin Zhu (317144)

December 2018

Table S3. Average MPH of 20 top high-heterosis hybrids of yield and yield components. (PDF 100âkb

Additional file 4: of Genetic basis of heterosis for yield and yield components explored by QTL mapping across four genetic populations in upland cotton

Cong Li (115171)
Tianlun Zhao (5855069)
Hurong Yu (5855066)
Cheng Li (6339)
Xiaolei Deng (5855072)
Yating Dong (4017506)
Fan Zhang (46132)
Yi Zhang (9093)
Lei Mei (1308327)
Jinhong Chen (396617)
Shuijin Zhu (317144)

December 2018

Table S4. Correlations between yield and yield components estimated in the RIL, IF2, and two BCF1 po...

Additional file 3: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

Muhammad Jamshed (1892518)
Fei Jia (688426)
Juwu Gong (781989)
Koffi Palanga (3467450)
Yuzhen Shi (781988)
Junwen Li (781986)
Haihong Shang (781990)
Aiying Liu (301366)
Tingting Chen (111216)
Zhen Zhang (86004)
Juan Cai (470988)
Qun Ge (781991)
Zhi Liu (165121)
Quanwei Lu (781993)
Xiaoying Deng (781994)
Yunna Tan (781995)
Harun or Rashid (3559178)
Zareen Sarfraz (3559172)
Murtaza Hassan (3559175)
Wankui Gong (781997)
Youlu Yuan (688107)

March 2016

Position and markers details of identified QTLs for fiber quality traits in an intraspecific RIL. (X...

Additional file 4: of Genetic and transcriptomic dissection of the fiber length trait from a cotton (Gossypium hirsutum L.) MAGIC population

Marina Naoumkina (40666)
Gregory Thyssen (531000)
David Fang (3399707)
Johnie Jenkins (3407099)
Jack McCarty (3407090)
Christopher Florane (531001)

February 2019

Analysis of the boundaries of the D11:24-Mb UHML locus. (PDF 1104âkb) (A) GWAS Manhattan plot of C...

Additional file 6: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

Muhammad Jamshed (1892518)
Fei Jia (688426)
Juwu Gong (781989)
Koffi Palanga (3467450)
Yuzhen Shi (781988)
Junwen Li (781986)
Haihong Shang (781990)
Aiying Liu (301366)
Tingting Chen (111216)
Zhen Zhang (86004)
Juan Cai (470988)
Qun Ge (781991)
Zhi Liu (165121)
Quanwei Lu (781993)
Xiaoying Deng (781994)
Yunna Tan (781995)
Harun or Rashid (3559178)
Zareen Sarfraz (3559172)
Murtaza Hassan (3559175)
Wankui Gong (781997)
Youlu Yuan (688107)

March 2016

Identified QTLs for fiber traits in a RIL and comparison with the findings of previous reports. (XLS...

Additional file 2: of Genetic basis of heterosis for yield and yield components explored by QTL mapping across four genetic populations in upland cotton

Cong Li (115171)
Tianlun Zhao (5855069)
Hurong Yu (5855066)
Cheng Li (6339)
Xiaolei Deng (5855072)
Yating Dong (4017506)
Fan Zhang (46132)
Yi Zhang (9093)
Lei Mei (1308327)
Jinhong Chen (396617)
Shuijin Zhu (317144)

December 2018

Table S2. HB of RILs and MPH percentage of yield and yield components across four environments. (PDF...

Additional file 11: of Identifying favorable alleles for improving key agronomic traits in upland cotton

Panhong Dai (6582131)
Yuchen Miao (4091653)
Shoupu He (561548)
Zhaoe Pan (561546)
Yinhua Jia (561544)
Yingfan Cai (3922766)
Junling Sun (561545)
Liru Wang (561552)
Baoyin Pang (561551)
Mi Wang (2476957)
Xiongming Du (561554)

April 2019

Figure S6. Physical map of 278 markers associated with 15 agronomic traits in 419 accessions. The lo...

Additional file 1: Table S1. of Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton

Xihua Li (148840)
Man Wu (176916)
Guoyuan Liu (3860371)
Wenfeng Pei (843644)
Honghong Zhai (799135)
Jiwen Yu (534751)
Jinfa Zhang (121196)
Shuxun Yu (89036)

May 2017

Average fiber quality of the two BILs tested in different environments based on Yu et al. [37]. (DOC...

Additional file 4: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Abstract

Extracted data

Additional file 4: of Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

Abstract

Extracted data

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