MOESM1 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

MOESM5 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 5: Figure S3. Functional annotation of secreted proteins as determined using the Kyo...

MOESM2 of Efficient hydrolysis of raw starch and ethanol fermentation: a novel raw starch-digesting glucoamylase from Penicillium oxalicum

Qiang-Sheng Xu (2936907)
Yu-Si Yan (3499211)
Jia-Xun Feng (41405)

October 2016

Additional file 2: Figure S1. Theoretical three-dimensional structure of PoGA15A. The structural mod...

MOESM2 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 2: Table S1. List of 274 single nucleotide variations and 12 Insertion/deletions (In...

MOESM4 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 4: Table S3. List of 23 candidate regulatory genes determined in this study that reg...

MOESM2 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 2: Figure S1. Pearsonâs correlation coefficient of the transcriptomes of Penicilli...

MOESM7 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 7: Figure S3. Pearsonâs correlation analysis of the transcriptomes of Penicillium ...

MOESM5 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 5: Figure S2. Confirmation of deletion of 11 candidate genes derived from ∆PoxKu70 a...

MOESM4 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan (3499211)
Shuai Zhao (803827)
Lu-Sheng Liao (3499220)
Qi-Peng He (3499217)
Ya-Ru Xiong (3499229)
Long Wang (95893)
Cheng-Xi Li (3499205)
Jia-Xun Feng (41405)

November 2017

Additional file 4: Table S2. List of 108 genes differentially coexpressed on all carbon sources test...

MOESM1 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 1: Table S1. Summary of transcriptomic data generated from Penicillium oxalicum

MOESM1 of Global transcriptional response of Aspergillus niger in the process of glucoamylase fermentation

Yu-fei Sui (4513624)
Li-ming Ouyang (4513618)
Ju Chu (259648)
Wei-qiang Cao (4513621)
Li-feng liang (4513633)
Ying-ping Zhuang (4513630)
Shu Cheng (807879)
Henk Norrman (4513627)
Si-liang Zhang (4513615)
Geng-yun zhang (4513612)

October 2017

Additional file 1: Table S1. All differentially expressed genes in the process of glucoamylase ferme...

MOESM1 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 1: Table S1. Summary of RNA-sequencing data generated from P. oxalicum strain HP7-1

MOESM7 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 7: Figure S3. Growth curve of P. oxalicum mutants ÎPoxMBF1 and ÎPoxKu70 in glucose...

MOESM2 of Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Liwei Gao (794309)
Zhonghai Li (460152)
Chengqiang Xia (3938972)
Yinbo Qu (122920)
Meng Liu (261774)
Piao Yang (794311)
Lele Yu (3938969)
Xin Song (465237)

April 2017

Additional file 2. Fig. S2 Activity analysis of lignocellulolytic enzymes by zymography. (A-C) Xylan...

MOESM10 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 10: Figure S6. Activities of crude enzymes from PoxClrB, POX02484, and POX08522 dele...

MOESM2 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 2: Figure S1. Pearson’s correlation analysis of transcriptomes from Penicillium oxal...

MOESM5 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 5: Figure S3. Functional annotation of secreted proteins as determined using the Kyo...

MOESM2 of Efficient hydrolysis of raw starch and ethanol fermentation: a novel raw starch-digesting glucoamylase from Penicillium oxalicum

Qiang-Sheng Xu (2936907)
Yu-Si Yan (3499211)
Jia-Xun Feng (41405)

October 2016

Additional file 2: Figure S1. Theoretical three-dimensional structure of PoGA15A. The structural mod...

MOESM2 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 2: Table S1. List of 274 single nucleotide variations and 12 Insertion/deletions (In...

MOESM4 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 4: Table S3. List of 23 candidate regulatory genes determined in this study that reg...

MOESM2 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 2: Figure S1. Pearsonâs correlation coefficient of the transcriptomes of Penicilli...

MOESM7 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 7: Figure S3. Pearsonâs correlation analysis of the transcriptomes of Penicillium ...

MOESM5 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 5: Figure S2. Confirmation of deletion of 11 candidate genes derived from ∆PoxKu70 a...

MOESM4 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan (3499211)
Shuai Zhao (803827)
Lu-Sheng Liao (3499220)
Qi-Peng He (3499217)
Ya-Ru Xiong (3499229)
Long Wang (95893)
Cheng-Xi Li (3499205)
Jia-Xun Feng (41405)

November 2017

Additional file 4: Table S2. List of 108 genes differentially coexpressed on all carbon sources test...

MOESM1 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 1: Table S1. Summary of transcriptomic data generated from Penicillium oxalicum

MOESM1 of Global transcriptional response of Aspergillus niger in the process of glucoamylase fermentation

Yu-fei Sui (4513624)
Li-ming Ouyang (4513618)
Ju Chu (259648)
Wei-qiang Cao (4513621)
Li-feng liang (4513633)
Ying-ping Zhuang (4513630)
Shu Cheng (807879)
Henk Norrman (4513627)
Si-liang Zhang (4513615)
Geng-yun zhang (4513612)

October 2017

Additional file 1: Table S1. All differentially expressed genes in the process of glucoamylase ferme...

MOESM1 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 1: Table S1. Summary of RNA-sequencing data generated from P. oxalicum strain HP7-1

MOESM7 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 7: Figure S3. Growth curve of P. oxalicum mutants ÎPoxMBF1 and ÎPoxKu70 in glucose...

MOESM2 of Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Liwei Gao (794309)
Zhonghai Li (460152)
Chengqiang Xia (3938972)
Yinbo Qu (122920)
Meng Liu (261774)
Piao Yang (794311)
Lele Yu (3938969)
Xin Song (465237)

April 2017

Additional file 2. Fig. S2 Activity analysis of lignocellulolytic enzymes by zymography. (A-C) Xylan...

MOESM10 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 10: Figure S6. Activities of crude enzymes from PoxClrB, POX02484, and POX08522 dele...

MOESM2 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 2: Figure S1. Pearson’s correlation analysis of transcriptomes from Penicillium oxal...

MOESM5 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 5: Figure S3. Functional annotation of secreted proteins as determined using the Kyo...

MOESM2 of Efficient hydrolysis of raw starch and ethanol fermentation: a novel raw starch-digesting glucoamylase from Penicillium oxalicum

Qiang-Sheng Xu (2936907)
Yu-Si Yan (3499211)
Jia-Xun Feng (41405)

October 2016

Additional file 2: Figure S1. Theoretical three-dimensional structure of PoGA15A. The structural mod...

MOESM2 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 2: Table S1. List of 274 single nucleotide variations and 12 Insertion/deletions (In...

MOESM1 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Abstract

Extracted data

MOESM1 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Abstract

Extracted data

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