MOESM7 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

MOESM3 of Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Liwei Gao (794309)
Zhonghai Li (460152)
Chengqiang Xia (3938972)
Yinbo Qu (122920)
Meng Liu (261774)
Piao Yang (794311)
Lele Yu (3938969)
Xin Song (465237)

April 2017

Additional file 3. Fig. S3 Enzyme activity analysis of wild-type, xlnR A871V and gpdA(p)::xlnR strai...

MOESM3 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 3: Table S2. PoxCxrA regulon in Penicillium oxalicum when subjected to Avicel as the...

MOESM1 of Release of glucose repression on xylose utilization in Kluyveromyces marxianus to enhance glucose-xylose co-utilization and xylitol production from corncob hydrolysate

Yan Hua (703543)
Jichao Wang (1491085)
Yelin Zhu (3614243)
Biao Zhang (148194)
Xin Kong (3074835)
Wenjie Li (6558)
Dongmei Wang (282313)
Jiong Hong (750162)

February 2019

Additional file 1: Table S1. Plasmids used in this study. Table S2. Primers used in this study. Tabl...

MOESM2 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 2: Figure S1. Pearsonâs correlation coefficient of the transcriptomes of Penicilli...

MOESM1 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 1: Table S1. Summary of RNA-seq reads obtained for Penicillium oxalicum HP7-1

MOESM4 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 4: Table S3. List of 23 candidate regulatory genes determined in this study that reg...

MOESM5 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 5: Figure S2. Confirmation of deletion of 11 candidate genes derived from ∆PoxKu70 a...

MOESM4 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan (3499211)
Shuai Zhao (803827)
Lu-Sheng Liao (3499220)
Qi-Peng He (3499217)
Ya-Ru Xiong (3499229)
Long Wang (95893)
Cheng-Xi Li (3499205)
Jia-Xun Feng (41405)

November 2017

Additional file 4: Table S2. List of 108 genes differentially coexpressed on all carbon sources test...

MOESM7 of Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Liwei Gao (794309)
Zhonghai Li (460152)
Chengqiang Xia (3938972)
Yinbo Qu (122920)
Meng Liu (261774)
Piao Yang (794311)
Lele Yu (3938969)
Xin Song (465237)

April 2017

Additional file 7. Fig. S7 Enzyme activity analysis and phenotype observation of the transformant RE...

MOESM7 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 7: Figure S3. Growth curve of P. oxalicum mutants ÎPoxMBF1 and ÎPoxKu70 in glucose...

MOESM10 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 10: Figure S6. Activities of crude enzymes from PoxClrB, POX02484, and POX08522 dele...

MOESM2 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 2: Figure S1. Pearson’s correlation analysis of transcriptomes from Penicillium oxal...

MOESM8 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 8: Figure S4. Phenotypic comparison of wild-type P. oxalicum strain HP7-1 and the ΔP...

MOESM2 of Efficient hydrolysis of raw starch and ethanol fermentation: a novel raw starch-digesting glucoamylase from Penicillium oxalicum

Qiang-Sheng Xu (2936907)
Yu-Si Yan (3499211)
Jia-Xun Feng (41405)

October 2016

Additional file 2: Figure S1. Theoretical three-dimensional structure of PoGA15A. The structural mod...

MOESM5 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 5: Figure S3. Functional annotation of secreted proteins as determined using the Kyo...

MOESM3 of Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Liwei Gao (794309)
Zhonghai Li (460152)
Chengqiang Xia (3938972)
Yinbo Qu (122920)
Meng Liu (261774)
Piao Yang (794311)
Lele Yu (3938969)
Xin Song (465237)

April 2017

Additional file 3. Fig. S3 Enzyme activity analysis of wild-type, xlnR A871V and gpdA(p)::xlnR strai...

MOESM3 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 3: Table S2. PoxCxrA regulon in Penicillium oxalicum when subjected to Avicel as the...

MOESM1 of Release of glucose repression on xylose utilization in Kluyveromyces marxianus to enhance glucose-xylose co-utilization and xylitol production from corncob hydrolysate

Yan Hua (703543)
Jichao Wang (1491085)
Yelin Zhu (3614243)
Biao Zhang (148194)
Xin Kong (3074835)
Wenjie Li (6558)
Dongmei Wang (282313)
Jiong Hong (750162)

February 2019

Additional file 1: Table S1. Plasmids used in this study. Table S2. Primers used in this study. Tabl...

MOESM2 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 2: Figure S1. Pearsonâs correlation coefficient of the transcriptomes of Penicilli...

MOESM1 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 1: Table S1. Summary of RNA-seq reads obtained for Penicillium oxalicum HP7-1

MOESM4 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 4: Table S3. List of 23 candidate regulatory genes determined in this study that reg...

MOESM5 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Mei-Yuan Zhang (6175172)
Shuai Zhao (803827)
Yuan-Ni Ning (6175175)
Li-Hao Fu (6175178)
Cheng-Xi Li (3499205)
Qi Wang (22418)
Ran You (602464)
Chen-Ying Wang (6175181)
Han-Nan Xu (6175184)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

January 2019

Additional file 5: Figure S2. Confirmation of deletion of 11 candidate genes derived from ∆PoxKu70 a...

MOESM4 of Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum

Yu-Si Yan (3499211)
Shuai Zhao (803827)
Lu-Sheng Liao (3499220)
Qi-Peng He (3499217)
Ya-Ru Xiong (3499229)
Long Wang (95893)
Cheng-Xi Li (3499205)
Jia-Xun Feng (41405)

November 2017

Additional file 4: Table S2. List of 108 genes differentially coexpressed on all carbon sources test...

MOESM7 of Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Liwei Gao (794309)
Zhonghai Li (460152)
Chengqiang Xia (3938972)
Yinbo Qu (122920)
Meng Liu (261774)
Piao Yang (794311)
Lele Yu (3938969)
Xin Song (465237)

April 2017

Additional file 7. Fig. S7 Enzyme activity analysis and phenotype observation of the transformant RE...

MOESM7 of Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression

Shuai Zhao (803827)
Qi Liu (33068)
Jiu-Xiang Wang (6652502)
Xu-Zhong Liao (6652508)
Hao Guo (346528)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Lu-Sheng Liao (3499220)
Xue-Mei Luo (5830109)
Jia-Xun Feng (41405)

April 2019

Additional file 7: Figure S3. Growth curve of P. oxalicum mutants ÎPoxMBF1 and ÎPoxKu70 in glucose...

MOESM10 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 10: Figure S6. Activities of crude enzymes from PoxClrB, POX02484, and POX08522 dele...

MOESM2 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 2: Figure S1. Pearson’s correlation analysis of transcriptomes from Penicillium oxal...

MOESM8 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 8: Figure S4. Phenotypic comparison of wild-type P. oxalicum strain HP7-1 and the ΔP...

MOESM2 of Efficient hydrolysis of raw starch and ethanol fermentation: a novel raw starch-digesting glucoamylase from Penicillium oxalicum

Qiang-Sheng Xu (2936907)
Yu-Si Yan (3499211)
Jia-Xun Feng (41405)

October 2016

Additional file 2: Figure S1. Theoretical three-dimensional structure of PoGA15A. The structural mod...

MOESM5 of Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

Shuai Zhao (803827)
Yu-Si Yan (3499211)
Qi-Peng He (3499217)
Lin Yang (45852)
Xin Yin (149454)
Cheng-Xi Li (3499205)
Li-Chun Mao (3499208)
Lu-Sheng Liao (3499220)
Jin-Qun Huang (3499223)
Shang-Bo Xie (3499232)
Qing-Dong Nong (3499214)
Zheng Zhang (88857)
Lei Jing (821154)
Ya-Ru Xiong (3499229)
Cheng-Jie Duan (3499226)
Jun-Liang Liu (1726237)
Jia-Xun Feng (41405)

September 2016

Additional file 5: Figure S3. Functional annotation of secreted proteins as determined using the Kyo...

MOESM3 of Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Liwei Gao (794309)
Zhonghai Li (460152)
Chengqiang Xia (3938972)
Yinbo Qu (122920)
Meng Liu (261774)
Piao Yang (794311)
Lele Yu (3938969)
Xin Song (465237)

April 2017

Additional file 3. Fig. S3 Enzyme activity analysis of wild-type, xlnR A871V and gpdA(p)::xlnR strai...

MOESM3 of How an essential Zn2Cys6 transcription factor PoxCxrA regulates cellulase gene expression in ascomycete fungi?

Lu-Sheng Liao (3499220)
Cheng-Xi Li (3499205)
Feng-Fei Zhang (5830106)
Yu-Si Yan (3499211)
Xue-Mei Luo (5830109)
Shuai Zhao (803827)
Jia-Xun Feng (41405)

May 2019

Additional file 3: Table S2. PoxCxrA regulon in Penicillium oxalicum when subjected to Avicel as the...

MOESM1 of Release of glucose repression on xylose utilization in Kluyveromyces marxianus to enhance glucose-xylose co-utilization and xylitol production from corncob hydrolysate

Yan Hua (703543)
Jichao Wang (1491085)
Yelin Zhu (3614243)
Biao Zhang (148194)
Xin Kong (3074835)
Wenjie Li (6558)
Dongmei Wang (282313)
Jiong Hong (750162)

February 2019

Additional file 1: Table S1. Plasmids used in this study. Table S2. Primers used in this study. Tabl...

MOESM7 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Abstract

Extracted data

MOESM7 of Identification of an essential regulator controlling the production of raw-starch-digesting glucoamylase in Penicillium oxalicum

Abstract

Extracted data

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