Additional file 4: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Additional file 4: of Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance

S. Staton (3566690)
John Burke (578290)

August 2015

Depicts the relationship between retrotransposon DNA and genome size. (PDF 63 kb

Additional file 4: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

Zengxiang Wu (6683102)
Kaining Hu (6683105)
Mengjiao Yan (6683108)
Liping Song (2625808)
Jing Wen (25059)
Chaozhi Ma (137661)
Jinxiong Shen (137662)
Tingdong Fu (137664)
Bin Yi (137660)
Jinxing Tu (137663)

May 2019

Table S3. SNP number counts between alloplasmic mitochondrial genome and Brassica juncea mitochondri...

Additional file 3: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

Jinglei Wang (4706083)
Yang Qiu (368797)
Feng Cheng (124653)
Xiaohua Chen (257762)
Xiaohui Zhang (81778)
Haiping Wang (318650)
Jiangping Song (413328)
Mengmeng Duan (3596504)
Haohui Yang (4706086)
Xixiang Li (128220)

December 2017

Flowering genes identified in Raphanus sativus, Brassica oleracea, and Brassica rapa. (XLS 64Â kb

Additional file 3: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

TE concensus sequences generated by RepeatModeler in spinach genome. (FASTA 1073 kb

Additional file 5: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

The primers used for amplification of the RT sequences of lineages in spinach. (DOC 42 kb

Full length TE seqeunces of spinach

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

These data were analyzed as a part of the following publicaiton: " The landscape of transposable ele...

Data from: The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Li, Shu-Fen
Guo, Yu-Jiao
Li, Jia-Rong
Zhang, Dong-Xu
Wang, Bing-Xiao
Li, Ning
Deng, Chuan-Liang
Gao, Wu-Jun

January 2019

Background: Repetitive sequences, including transposable elements (TEs) and satellite DNAs, occupy a...

Additional file 1: of Characterization of repeated DNA sequences in genomes of blue-flowered flax

Nadezhda Bolsheva (3436025)
Nataliya Melnikova (514328)
Ilya Kirov (587771)
Alexey Dmitriev (514331)
George Krasnov (780701)
Đlexandra Amosova (4725180)
Tatiana Samatadze (4725171)
Olga Yurkevich (3436013)
Svyatoslav Zoshchuk (4725168)
Anna Kudryavtseva (514334)
Olga Muravenko (3436022)

February 2019

Putative satellite DNA sequences in genomes of blue-flowered flax. (DOCX 1037 kb

Additional file 2: of Construction of a high-density genetic map and the X/Y sex-determining gene mapping in spinach based on large-scale markers developed by specific-locus amplified fragment sequencing (SLAF-seq)

Wei Qian (56612)
Guiyan Fan (3904696)
Dandan Liu (303719)
Helong Zhang (3441683)
Xiaowu Wang (167537)
Jian Wu (41301)
Zhaosheng Xu (3904693)

April 2017

High-density genetic linkage map of spinach constructed in this study. (XLSX 100 kb

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file Â 3: of Genomic and evolutionary aspects of chloroplast tRNA in monocot plants

Tapan Mohanta (3403673)
Abdul Khan (3570392)
Abeer Hashem (4510312)
Elsayed Allah (6253190)
Dhananjay Yadav (713572)
Ahmed Al-Harrasi (556399)

January 2019

Data S1. tRNA sequences of studied chloroplast genome of the monocot plants. (TXT 24 kb

Additional file 3: of Transcriptome sequencing, annotation and polymorphism detection in the hop bush, Dodonaea viscosa

Matthew Christmas (3528302)
Ed Biffin (151572)
Andrew Lowe (197032)

October 2015

Gene Ontology terms assigned to the contigs with significant BLAST hits to plant genes,listed under ...

Additional file 1: of Genome-wide analysis of LTR-retrotransposons in oil palm

Thierry BeulĂŠ (3483767)
MawussĂŠ Agbessi (3483761)
Stephane Dussert (2332948)
Estelle Jaligot (537974)
Romain Guyot (166092)

October 2015

De novo consensus TE databases. Contains the E. oleifera (E08_denovoLibTEs.txt) and E. guineensis (p...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 4: of Extensive exchange of transposable elements in the Drosophila pseudoobscura group

Tom Hill (3177843)
Andrea Betancourt (418875)

June 2018

Fasta file of TE sequences generated in the TE annotation, with basic description of each TE sequenc...

Additional file 4: of Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance

S. Staton (3566690)
John Burke (578290)

August 2015

Depicts the relationship between retrotransposon DNA and genome size. (PDF 63 kb

Additional file 4: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

Zengxiang Wu (6683102)
Kaining Hu (6683105)
Mengjiao Yan (6683108)
Liping Song (2625808)
Jing Wen (25059)
Chaozhi Ma (137661)
Jinxiong Shen (137662)
Tingdong Fu (137664)
Bin Yi (137660)
Jinxing Tu (137663)

May 2019

Table S3. SNP number counts between alloplasmic mitochondrial genome and Brassica juncea mitochondri...

Additional file 3: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

Jinglei Wang (4706083)
Yang Qiu (368797)
Feng Cheng (124653)
Xiaohua Chen (257762)
Xiaohui Zhang (81778)
Haiping Wang (318650)
Jiangping Song (413328)
Mengmeng Duan (3596504)
Haohui Yang (4706086)
Xixiang Li (128220)

December 2017

Flowering genes identified in Raphanus sativus, Brassica oleracea, and Brassica rapa. (XLS 64Â kb

Additional file 3: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

TE concensus sequences generated by RepeatModeler in spinach genome. (FASTA 1073 kb

Additional file 5: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

The primers used for amplification of the RT sequences of lineages in spinach. (DOC 42 kb

Full length TE seqeunces of spinach

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

These data were analyzed as a part of the following publicaiton: " The landscape of transposable ele...

Data from: The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Li, Shu-Fen
Guo, Yu-Jiao
Li, Jia-Rong
Zhang, Dong-Xu
Wang, Bing-Xiao
Li, Ning
Deng, Chuan-Liang
Gao, Wu-Jun

January 2019

Background: Repetitive sequences, including transposable elements (TEs) and satellite DNAs, occupy a...

Additional file 1: of Characterization of repeated DNA sequences in genomes of blue-flowered flax

Nadezhda Bolsheva (3436025)
Nataliya Melnikova (514328)
Ilya Kirov (587771)
Alexey Dmitriev (514331)
George Krasnov (780701)
Đlexandra Amosova (4725180)
Tatiana Samatadze (4725171)
Olga Yurkevich (3436013)
Svyatoslav Zoshchuk (4725168)
Anna Kudryavtseva (514334)
Olga Muravenko (3436022)

February 2019

Putative satellite DNA sequences in genomes of blue-flowered flax. (DOCX 1037 kb

Additional file 2: of Construction of a high-density genetic map and the X/Y sex-determining gene mapping in spinach based on large-scale markers developed by specific-locus amplified fragment sequencing (SLAF-seq)

Wei Qian (56612)
Guiyan Fan (3904696)
Dandan Liu (303719)
Helong Zhang (3441683)
Xiaowu Wang (167537)
Jian Wu (41301)
Zhaosheng Xu (3904693)

April 2017

High-density genetic linkage map of spinach constructed in this study. (XLSX 100 kb

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file Â 3: of Genomic and evolutionary aspects of chloroplast tRNA in monocot plants

Tapan Mohanta (3403673)
Abdul Khan (3570392)
Abeer Hashem (4510312)
Elsayed Allah (6253190)
Dhananjay Yadav (713572)
Ahmed Al-Harrasi (556399)

January 2019

Data S1. tRNA sequences of studied chloroplast genome of the monocot plants. (TXT 24 kb

Additional file 3: of Transcriptome sequencing, annotation and polymorphism detection in the hop bush, Dodonaea viscosa

Matthew Christmas (3528302)
Ed Biffin (151572)
Andrew Lowe (197032)

October 2015

Gene Ontology terms assigned to the contigs with significant BLAST hits to plant genes,listed under ...

Additional file 1: of Genome-wide analysis of LTR-retrotransposons in oil palm

Thierry BeulĂŠ (3483767)
MawussĂŠ Agbessi (3483761)
Stephane Dussert (2332948)
Estelle Jaligot (537974)
Romain Guyot (166092)

October 2015

De novo consensus TE databases. Contains the E. oleifera (E08_denovoLibTEs.txt) and E. guineensis (p...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 4: of Extensive exchange of transposable elements in the Drosophila pseudoobscura group

Tom Hill (3177843)
Andrea Betancourt (418875)

June 2018

Fasta file of TE sequences generated in the TE annotation, with basic description of each TE sequenc...

Additional file 4: of Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance

S. Staton (3566690)
John Burke (578290)

August 2015

Depicts the relationship between retrotransposon DNA and genome size. (PDF 63 kb

Additional file 4: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

Zengxiang Wu (6683102)
Kaining Hu (6683105)
Mengjiao Yan (6683108)
Liping Song (2625808)
Jing Wen (25059)
Chaozhi Ma (137661)
Jinxiong Shen (137662)
Tingdong Fu (137664)
Bin Yi (137660)
Jinxing Tu (137663)

May 2019

Table S3. SNP number counts between alloplasmic mitochondrial genome and Brassica juncea mitochondri...

Additional file 3: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

Jinglei Wang (4706083)
Yang Qiu (368797)
Feng Cheng (124653)
Xiaohua Chen (257762)
Xiaohui Zhang (81778)
Haiping Wang (318650)
Jiangping Song (413328)
Mengmeng Duan (3596504)
Haohui Yang (4706086)
Xixiang Li (128220)

December 2017

Flowering genes identified in Raphanus sativus, Brassica oleracea, and Brassica rapa. (XLS 64Â kb

Additional file 4: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Abstract

Extracted data

Additional file 4: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Abstract

Extracted data

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