Additional file 3: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

Additional file 3: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

Zengxiang Wu (6683102)
Kaining Hu (6683105)
Mengjiao Yan (6683108)
Liping Song (2625808)
Jing Wen (25059)
Chaozhi Ma (137661)
Jinxiong Shen (137662)
Tingdong Fu (137664)
Bin Yi (137660)
Jinxing Tu (137663)

May 2019

Figure S1. Mitochondrial genome circle map of 5 alloplasmic male-sterile lines in Brassica juncea. D...

Additional file 5: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Table S3. Putative cis-elements in promoter region of the 34 MtN3/saliva/SWEETs genes in B. rapa. (X...

Additional file 2: Table S2. of Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice

Yiyi Wang (649354)
Lin Feng (84785)
Yuxin Zhu (3512447)
Yuan Li (67017)
Hanwei Yan (602147)
Yan Xiang (50965)

September 2015

The function prediction of WRKY III genes of Populus, Grape, Arabidopsis, Rice. (XLS 169 kb

Additional file 1: of De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

Shanshan Nie (3530684)
Chao Li (145513)
Liang Xu (102656)
Yan Wang (15435)
Danqiong Huang (3530693)
Everlyne Muleke (3530690)
Xiaochuan Sun (3530687)
Yang Xie (46489)
Liwang Liu (424650)

May 2016

Summary of all the assembled unigenes in radish leaf transcriptome. (XLSX 14582 kb

Additional file 6: of De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

Shanshan Nie (3530684)
Chao Li (145513)
Liang Xu (102656)
Yan Wang (15435)
Danqiong Huang (3530693)
Everlyne Muleke (3530690)
Xiaochuan Sun (3530687)
Yang Xie (46489)
Liwang Liu (424650)

May 2016

Specific primer sequences of flowering related genes for T-A cloning and RT-qPCR. (XLSX 11 kb

Additional file 4: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

Xiaobo Luo (1501822)
Liang Xu (102656)
Dongyi Liang (4222315)
Yan Wang (15435)
Wei Zhang (405)
Xianwen Zhu (4222312)
Yuelin Zhu (50954)
Haiyan Jiang (39944)
Mingjia Tang (4222318)
Liwang Liu (424650)

July 2017

List of novel transcripts detected in the genotypes ‘NAU-YH’, ‘NAU-LB’ and ‘NAU-RG’. (XLSX 523 kb

Additional file 3: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Figure S1. Copy number changes in the B. rapa and Arabidopsis MtN3/saliva/SWEET genes in Clades Aâ...

Additional file 1: Table S1. of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

Xiaobo Luo (1501822)
Liang Xu (102656)
Dongyi Liang (4222315)
Yan Wang (15435)
Wei Zhang (405)
Xianwen Zhu (4222312)
Yuelin Zhu (50954)
Haiyan Jiang (39944)
Mingjia Tang (4222318)
Liwang Liu (424650)

July 2017

Radish genotypes used for genetic diversity analysis in this study. Table S2. Numbers of identified ...

Additional file 6: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Table S4. Secondary structural prediction of theMtN3/saliva/SWEETs proteins of B. rapa. (XLSX 52Â kb

Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

Jinglei Wang
Yang Qiu
Feng Cheng
Xiaohua Chen
Xiaohui Zhang
Haiping Wang
Jiangping Song
Mengmeng Duan
Haohui Yang
Xixiang Li

December 2017

Abstract Background Radish (Raphanus sativus L.) belongs to the family Brassicaceae, and is an econo...

Additional file 1: of Genome wide analysis of MADS-box gene family in Brassica oleracea reveals conservation and variation in flower development

Xiao-Guang Sheng (6486569)
Zhen-Qing Zhao (6486575)
Jian-Sheng Wang (5823458)
Hui-Fang Yu (6486578)
Yu-Sen Shen (6486581)
Xiao-Yuan Zeng (6486587)
Hong-Hui Gu (6486590)

March 2019

Figure S1. Phylogenetic tree of MADS-box genes from B. oleracea and A. thaliana using neighbor-joini...

Additional file 2: of Genome wide analysis of MADS-box gene family in Brassica oleracea reveals conservation and variation in flower development

Xiao-Guang Sheng (6486569)
Zhen-Qing Zhao (6486575)
Jian-Sheng Wang (5823458)
Hui-Fang Yu (6486578)
Yu-Sen Shen (6486581)
Xiao-Yuan Zeng (6486587)
Hong-Hui Gu (6486590)

March 2019

Figure S2. Phylogenetic tree of MADS-box genes from B. oleracea and B. rapa using neighbor-joining m...

Additional file 1: of Genome-wide analysis and stress-responsive expression of CCCH zinc finger family genes in Brassica rapa

Boyi Pi (6158561)
Xinghui He (6158564)
Ying Ruan (6158567)
Jyan-Chyun Jang (3179142)
Yong Huang (15745)

December 2018

Detailed information of CCCH gene family in B.rapa. Sequences and information of CCCH genes and prot...

Additional file 9: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Figure S3. WebLogo of the most conserved consensus motifs of the amino acids of B. rapa. (TIFF 1081Â...

Additional file 2: of Genome-wide analysis and stress-responsive expression of CCCH zinc finger family genes in Brassica rapa

Boyi Pi (6158561)
Xinghui He (6158564)
Ying Ruan (6158567)
Jyan-Chyun Jang (3179142)
Yong Huang (15745)

December 2018

CCCH duplicated genes of B. rapa. Syntenic analysis between Arabidopsis and B. rapa was detected at ...

Additional file 3: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

Zengxiang Wu (6683102)
Kaining Hu (6683105)
Mengjiao Yan (6683108)
Liping Song (2625808)
Jing Wen (25059)
Chaozhi Ma (137661)
Jinxiong Shen (137662)
Tingdong Fu (137664)
Bin Yi (137660)
Jinxing Tu (137663)

May 2019

Figure S1. Mitochondrial genome circle map of 5 alloplasmic male-sterile lines in Brassica juncea. D...

Additional file 5: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Table S3. Putative cis-elements in promoter region of the 34 MtN3/saliva/SWEETs genes in B. rapa. (X...

Additional file 2: Table S2. of Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice

Yiyi Wang (649354)
Lin Feng (84785)
Yuxin Zhu (3512447)
Yuan Li (67017)
Hanwei Yan (602147)
Yan Xiang (50965)

September 2015

The function prediction of WRKY III genes of Populus, Grape, Arabidopsis, Rice. (XLS 169 kb

Additional file 1: of De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

Shanshan Nie (3530684)
Chao Li (145513)
Liang Xu (102656)
Yan Wang (15435)
Danqiong Huang (3530693)
Everlyne Muleke (3530690)
Xiaochuan Sun (3530687)
Yang Xie (46489)
Liwang Liu (424650)

May 2016

Summary of all the assembled unigenes in radish leaf transcriptome. (XLSX 14582 kb

Additional file 6: of De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

Shanshan Nie (3530684)
Chao Li (145513)
Liang Xu (102656)
Yan Wang (15435)
Danqiong Huang (3530693)
Everlyne Muleke (3530690)
Xiaochuan Sun (3530687)
Yang Xie (46489)
Liwang Liu (424650)

May 2016

Specific primer sequences of flowering related genes for T-A cloning and RT-qPCR. (XLSX 11 kb

Additional file 4: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

Xiaobo Luo (1501822)
Liang Xu (102656)
Dongyi Liang (4222315)
Yan Wang (15435)
Wei Zhang (405)
Xianwen Zhu (4222312)
Yuelin Zhu (50954)
Haiyan Jiang (39944)
Mingjia Tang (4222318)
Liwang Liu (424650)

July 2017

List of novel transcripts detected in the genotypes ‘NAU-YH’, ‘NAU-LB’ and ‘NAU-RG’. (XLSX 523 kb

Additional file 3: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Figure S1. Copy number changes in the B. rapa and Arabidopsis MtN3/saliva/SWEET genes in Clades Aâ...

Additional file 1: Table S1. of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

Xiaobo Luo (1501822)
Liang Xu (102656)
Dongyi Liang (4222315)
Yan Wang (15435)
Wei Zhang (405)
Xianwen Zhu (4222312)
Yuelin Zhu (50954)
Haiyan Jiang (39944)
Mingjia Tang (4222318)
Liwang Liu (424650)

July 2017

Radish genotypes used for genetic diversity analysis in this study. Table S2. Numbers of identified ...

Additional file 6: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Table S4. Secondary structural prediction of theMtN3/saliva/SWEETs proteins of B. rapa. (XLSX 52Â kb

Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

Jinglei Wang
Yang Qiu
Feng Cheng
Xiaohua Chen
Xiaohui Zhang
Haiping Wang
Jiangping Song
Mengmeng Duan
Haohui Yang
Xixiang Li

December 2017

Abstract Background Radish (Raphanus sativus L.) belongs to the family Brassicaceae, and is an econo...

Additional file 1: of Genome wide analysis of MADS-box gene family in Brassica oleracea reveals conservation and variation in flower development

Xiao-Guang Sheng (6486569)
Zhen-Qing Zhao (6486575)
Jian-Sheng Wang (5823458)
Hui-Fang Yu (6486578)
Yu-Sen Shen (6486581)
Xiao-Yuan Zeng (6486587)
Hong-Hui Gu (6486590)

March 2019

Figure S1. Phylogenetic tree of MADS-box genes from B. oleracea and A. thaliana using neighbor-joini...

Additional file 2: of Genome wide analysis of MADS-box gene family in Brassica oleracea reveals conservation and variation in flower development

Xiao-Guang Sheng (6486569)
Zhen-Qing Zhao (6486575)
Jian-Sheng Wang (5823458)
Hui-Fang Yu (6486578)
Yu-Sen Shen (6486581)
Xiao-Yuan Zeng (6486587)
Hong-Hui Gu (6486590)

March 2019

Figure S2. Phylogenetic tree of MADS-box genes from B. oleracea and B. rapa using neighbor-joining m...

Additional file 1: of Genome-wide analysis and stress-responsive expression of CCCH zinc finger family genes in Brassica rapa

Boyi Pi (6158561)
Xinghui He (6158564)
Ying Ruan (6158567)
Jyan-Chyun Jang (3179142)
Yong Huang (15745)

December 2018

Detailed information of CCCH gene family in B.rapa. Sequences and information of CCCH genes and prot...

Additional file 9: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Figure S3. WebLogo of the most conserved consensus motifs of the amino acids of B. rapa. (TIFF 1081Â...

Additional file 2: of Genome-wide analysis and stress-responsive expression of CCCH zinc finger family genes in Brassica rapa

Boyi Pi (6158561)
Xinghui He (6158564)
Ying Ruan (6158567)
Jyan-Chyun Jang (3179142)
Yong Huang (15745)

December 2018

CCCH duplicated genes of B. rapa. Syntenic analysis between Arabidopsis and B. rapa was detected at ...

Additional file 3: of Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea

Zengxiang Wu (6683102)
Kaining Hu (6683105)
Mengjiao Yan (6683108)
Liping Song (2625808)
Jing Wen (25059)
Chaozhi Ma (137661)
Jinxiong Shen (137662)
Tingdong Fu (137664)
Bin Yi (137660)
Jinxing Tu (137663)

May 2019

Figure S1. Mitochondrial genome circle map of 5 alloplasmic male-sterile lines in Brassica juncea. D...

Additional file 5: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Table S3. Putative cis-elements in promoter region of the 34 MtN3/saliva/SWEETs genes in B. rapa. (X...

Additional file 2: Table S2. of Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice

Yiyi Wang (649354)
Lin Feng (84785)
Yuxin Zhu (3512447)
Yuan Li (67017)
Hanwei Yan (602147)
Yan Xiang (50965)

September 2015

The function prediction of WRKY III genes of Populus, Grape, Arabidopsis, Rice. (XLS 169 kb

Additional file 3: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

Abstract

Extracted data

Additional file 3: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

Abstract

Extracted data

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