Additional file 1: of Characterization of repeated DNA sequences in genomes of blue-flowered flax

Additional file 10: of Novel flax orbitide derived from genetic deletion

Peta-Gaye Burnett (5245766)
Lester Young (5245760)
Clara Olivia (5245763)
Pramodkumar Jadhav (5245751)
Denis Okinyo-Owiti (5245757)
Martin Reaney (5245754)

May 2018

Hollandia,Bethune_Orbitide_seq.fa sequence obtained from Sanger sequencing of the Hollandia/Z11637 o...

Additional file 3: of Gene duplication and evolution in recurring polyploidizationâdiploidization cycles in plants

Xin Qiao (1625608)
Qionghou Li (5239508)
Hao Yin (381910)
Kaijie Qi (4425949)
Leiting Li (3445646)
Runze Wang (4425946)
Shaoling Zhang (430456)
Andrew Paterson (267459)

February 2019

The absolute number of different modes of duplicate gene pairs in each taxon. (XLSX 49 kb

Additional file 2: Table S2. of Adjacent sequences disclose potential for intra-genomic dispersal of satellite DNA repeats and suggest a complex network with transposable elements

Eva SatoviÄ (3531446)
Tanja Vojvoda Zeljko (3080019)
Andrea Luchetti (183589)
Barbara Mantovani (381805)
Miroslav Plohl (427555)

December 2016

Positions of analyzed Crassostrea gigas genomic fragments in scaffolds. (DOCX 14Â kb

Additional file 3: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

TE concensus sequences generated by RepeatModeler in spinach genome. (FASTA 1073 kb

Additional file 5: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

The primers used for amplification of the RT sequences of lineages in spinach. (DOC 42 kb

Additional file 4: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

TE dataset detected by signature-based methods in spinach genome. (FASTA 122852 kb

Additional file 3: of Evolution of blue-flowered species of genus Linum based on high-throughput sequencing of ribosomal RNA genes

Nadezhda Bolsheva (3436025)
Nataliya Melnikova (514328)
Ilya Kirov (587771)
Anna Speranskaya (3436031)
Anastasia Krinitsina (3436034)
Alexey Dmitriev (514331)
Maxim Belenikin (3436016)
George Krasnov (780701)
Valentina Lakunina (4725177)
Anastasiya Snezhkina (3436010)
Tatiana Rozhmina (3436019)
Tatiana Samatadze (4725171)
Olga Yurkevich (3436013)
Svyatoslav Zoshchuk (4725168)
Đlexandra Amosova (4725180)
Anna Kudryavtseva (514334)
Olga Muravenko (3436022)

December 2017

Consensus sequences of 5S rRNA genes of the studied flax samples. For flax specimens possessing diff...

Additional file 2: of Chloroplast genome resources and molecular markers differentiate rubber dandelion species from weedy relatives

Yingxiao Zhang (3714646)
Brian Iaffaldano (3714643)
Xiaofeng Zhuang (3714652)
John Cardina (3714649)
Katrina Cornish (2487316)

February 2017

Taraxacum officinale genotypes for sequencing and marker validation. (DOCX 47 kb

Additional file 1: Table S1. of Adjacent sequences disclose potential for intra-genomic dispersal of satellite DNA repeats and suggest a complex network with transposable elements

Eva SatoviÄ (3531446)
Tanja Vojvoda Zeljko (3080019)
Andrea Luchetti (183589)
Barbara Mantovani (381805)
Miroslav Plohl (427555)

December 2016

List of all analyzed genomic fragments, their composition and related sequences. (DOCX 45Â kb

Additional file Â 3: of Genomic and evolutionary aspects of chloroplast tRNA in monocot plants

Tapan Mohanta (3403673)
Abdul Khan (3570392)
Abeer Hashem (4510312)
Elsayed Allah (6253190)
Dhananjay Yadav (713572)
Ahmed Al-Harrasi (556399)

January 2019

Data S1. tRNA sequences of studied chloroplast genome of the monocot plants. (TXT 24 kb

Additional file 12: of Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini

Claire Anderson (734168)
Muhammad Khan (3412757)
Ann-Maree Catanzariti (3509984)
Cameron Jack (3509978)
Adnane Nemri (147172)
Gregory Lawrence (3509987)
Narayana Upadhyaya (783631)
Adrienne Hardham (3509981)
Jeffrey Ellis (3509993)
Peter Dodds (3509990)
David Jones (43312)

August 2016

AvrM14 sequences. DNA sequences of AvrM14-A and AvrM14-B and their alignment to sc27. (PDF 377 kb

Additional file 4: of Large scale patterns of genetic variation and differentiation in sugar maple from tropical Central America to temperate North America

Yalma Vargas-Rodriguez (3402995)
William Platt (3402998)
Lowell Urbatsch (3402992)
David Foltz (3402989)

November 2015

Fixation indices and number of singleton populations obtained from the spatial analyses of molecular...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file 3: of Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications

Xiaoyang Gao (150076)
Xuan Zhang (56049)
Honghu Meng (6167858)
Jing Li (10611)
Di Zhang (197959)
Changning Liu (14026)

January 2019

Table S6. Number of SSRs in fifteen chloroplast genomes of Paris species. Table S7. Polymorphism of ...

Additional file 18: of Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini

Claire Anderson (734168)
Muhammad Khan (3412757)
Ann-Maree Catanzariti (3509984)
Cameron Jack (3509978)
Adnane Nemri (147172)
Gregory Lawrence (3509987)
Narayana Upadhyaya (783631)
Adrienne Hardham (3509981)
Jeffrey Ellis (3509993)
Peter Dodds (3509990)
David Jones (43312)

August 2016

Primers used for PCR amplification of avirulence gene sequences. Table showing primer sequences, amp...

Additional file 10: of Novel flax orbitide derived from genetic deletion

Peta-Gaye Burnett (5245766)
Lester Young (5245760)
Clara Olivia (5245763)
Pramodkumar Jadhav (5245751)
Denis Okinyo-Owiti (5245757)
Martin Reaney (5245754)

May 2018

Hollandia,Bethune_Orbitide_seq.fa sequence obtained from Sanger sequencing of the Hollandia/Z11637 o...

Additional file 3: of Gene duplication and evolution in recurring polyploidizationâdiploidization cycles in plants

Xin Qiao (1625608)
Qionghou Li (5239508)
Hao Yin (381910)
Kaijie Qi (4425949)
Leiting Li (3445646)
Runze Wang (4425946)
Shaoling Zhang (430456)
Andrew Paterson (267459)

February 2019

The absolute number of different modes of duplicate gene pairs in each taxon. (XLSX 49 kb

Additional file 2: Table S2. of Adjacent sequences disclose potential for intra-genomic dispersal of satellite DNA repeats and suggest a complex network with transposable elements

Eva SatoviÄ (3531446)
Tanja Vojvoda Zeljko (3080019)
Andrea Luchetti (183589)
Barbara Mantovani (381805)
Miroslav Plohl (427555)

December 2016

Positions of analyzed Crassostrea gigas genomic fragments in scaffolds. (DOCX 14Â kb

Additional file 3: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

TE concensus sequences generated by RepeatModeler in spinach genome. (FASTA 1073 kb

Additional file 5: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

The primers used for amplification of the RT sequences of lineages in spinach. (DOC 42 kb

Additional file 4: of The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

Shu-Fen Li (427272)
Yu-Jiao Guo (6244574)
Jia-Rong Li (6244580)
Dong-Xu Zhang (6244589)
Bing-Xiao Wang (6244592)
Ning Li (45258)
Chuan-Liang Deng (561612)
Wu-Jun Gao (561609)

January 2019

TE dataset detected by signature-based methods in spinach genome. (FASTA 122852 kb

Additional file 3: of Evolution of blue-flowered species of genus Linum based on high-throughput sequencing of ribosomal RNA genes

Nadezhda Bolsheva (3436025)
Nataliya Melnikova (514328)
Ilya Kirov (587771)
Anna Speranskaya (3436031)
Anastasia Krinitsina (3436034)
Alexey Dmitriev (514331)
Maxim Belenikin (3436016)
George Krasnov (780701)
Valentina Lakunina (4725177)
Anastasiya Snezhkina (3436010)
Tatiana Rozhmina (3436019)
Tatiana Samatadze (4725171)
Olga Yurkevich (3436013)
Svyatoslav Zoshchuk (4725168)
Đlexandra Amosova (4725180)
Anna Kudryavtseva (514334)
Olga Muravenko (3436022)

December 2017

Consensus sequences of 5S rRNA genes of the studied flax samples. For flax specimens possessing diff...

Additional file 2: of Chloroplast genome resources and molecular markers differentiate rubber dandelion species from weedy relatives

Yingxiao Zhang (3714646)
Brian Iaffaldano (3714643)
Xiaofeng Zhuang (3714652)
John Cardina (3714649)
Katrina Cornish (2487316)

February 2017

Taraxacum officinale genotypes for sequencing and marker validation. (DOCX 47 kb

Additional file 1: Table S1. of Adjacent sequences disclose potential for intra-genomic dispersal of satellite DNA repeats and suggest a complex network with transposable elements

Eva SatoviÄ (3531446)
Tanja Vojvoda Zeljko (3080019)
Andrea Luchetti (183589)
Barbara Mantovani (381805)
Miroslav Plohl (427555)

December 2016

List of all analyzed genomic fragments, their composition and related sequences. (DOCX 45Â kb

Additional file Â 3: of Genomic and evolutionary aspects of chloroplast tRNA in monocot plants

Tapan Mohanta (3403673)
Abdul Khan (3570392)
Abeer Hashem (4510312)
Elsayed Allah (6253190)
Dhananjay Yadav (713572)
Ahmed Al-Harrasi (556399)

January 2019

Data S1. tRNA sequences of studied chloroplast genome of the monocot plants. (TXT 24 kb

Additional file 12: of Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini

Claire Anderson (734168)
Muhammad Khan (3412757)
Ann-Maree Catanzariti (3509984)
Cameron Jack (3509978)
Adnane Nemri (147172)
Gregory Lawrence (3509987)
Narayana Upadhyaya (783631)
Adrienne Hardham (3509981)
Jeffrey Ellis (3509993)
Peter Dodds (3509990)
David Jones (43312)

August 2016

AvrM14 sequences. DNA sequences of AvrM14-A and AvrM14-B and their alignment to sc27. (PDF 377 kb

Additional file 4: of Large scale patterns of genetic variation and differentiation in sugar maple from tropical Central America to temperate North America

Yalma Vargas-Rodriguez (3402995)
William Platt (3402998)
Lowell Urbatsch (3402992)
David Foltz (3402989)

November 2015

Fixation indices and number of singleton populations obtained from the spatial analyses of molecular...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file 3: of Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications

Xiaoyang Gao (150076)
Xuan Zhang (56049)
Honghu Meng (6167858)
Jing Li (10611)
Di Zhang (197959)
Changning Liu (14026)

January 2019

Table S6. Number of SSRs in fifteen chloroplast genomes of Paris species. Table S7. Polymorphism of ...

Additional file 18: of Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini

Claire Anderson (734168)
Muhammad Khan (3412757)
Ann-Maree Catanzariti (3509984)
Cameron Jack (3509978)
Adnane Nemri (147172)
Gregory Lawrence (3509987)
Narayana Upadhyaya (783631)
Adrienne Hardham (3509981)
Jeffrey Ellis (3509993)
Peter Dodds (3509990)
David Jones (43312)

August 2016

Primers used for PCR amplification of avirulence gene sequences. Table showing primer sequences, amp...

Additional file 10: of Novel flax orbitide derived from genetic deletion

Peta-Gaye Burnett (5245766)
Lester Young (5245760)
Clara Olivia (5245763)
Pramodkumar Jadhav (5245751)
Denis Okinyo-Owiti (5245757)
Martin Reaney (5245754)

May 2018

Hollandia,Bethune_Orbitide_seq.fa sequence obtained from Sanger sequencing of the Hollandia/Z11637 o...

Additional file 3: of Gene duplication and evolution in recurring polyploidizationâdiploidization cycles in plants

Xin Qiao (1625608)
Qionghou Li (5239508)
Hao Yin (381910)
Kaijie Qi (4425949)
Leiting Li (3445646)
Runze Wang (4425946)
Shaoling Zhang (430456)
Andrew Paterson (267459)

February 2019

The absolute number of different modes of duplicate gene pairs in each taxon. (XLSX 49 kb

Additional file 2: Table S2. of Adjacent sequences disclose potential for intra-genomic dispersal of satellite DNA repeats and suggest a complex network with transposable elements

Eva SatoviÄ (3531446)
Tanja Vojvoda Zeljko (3080019)
Andrea Luchetti (183589)
Barbara Mantovani (381805)
Miroslav Plohl (427555)

December 2016

Positions of analyzed Crassostrea gigas genomic fragments in scaffolds. (DOCX 14Â kb

Additional file 1: of Characterization of repeated DNA sequences in genomes of blue-flowered flax

Abstract

Extracted data

Additional file 1: of Characterization of repeated DNA sequences in genomes of blue-flowered flax

Abstract

Extracted data

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