Additional file 3: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Additional file 1: of Microbial community drivers of PK/NRP gene diversity in selected global soils

Chiara Borsetto (799041)
Gregory Amos (6726596)
Ulisses Rocha (6726599)
Alex Mitchell (57615)
Robert Finn (6726602)
Rabah Laidi (6726605)
Carlos Vallin (5665333)
David Pearce (266729)
Kevin Newsham (6726608)
Elizabeth Wellington (1475956)

May 2019

Table S1. Characteristics and GPS coordinates of soils used in this study. Table S2. Primers and con...

Additional file 3: of Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Estelle Couradeau (192890)
Ana Giraldo-Silva (6553622)
Francesca De Martini (6553625)
Ferran Garcia-Pichel (257121)

April 2019

Table S4. Taxonomic assignment and functional inferences based on phylogenetic placement for segrega...

Additional file 3: of Skin and gut microbiomes of a wild mammal respond to different environmental cues

Anton Lavrinienko (5699762)
Eugene Tukalenko (5699765)
Tapio Mappes (208603)
Phillip Watts (541434)

November 2018

Relative abundance (average of taxonomic groups abundance within each sample) of Phyla, Classes, Ord...

Additional file 5: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic bacterial taxonomic profiling (at genus level) (separated from...

Additional file 4: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic microbial taxonomic profiling (at genus level) (XLS 356 kb

Additional file 8: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic microbial function profiling (KEGG orthology function category...

Additional file 7: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Estimated absolute abundance (EAA) of the metagenomic bacterial taxonomic profiling (at genus level)...

Additional file 1: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Figure S1. Summary of sampling in this study. The sampling field (34.248727°N, 119.816724°E, 22.9 m ...

Additional file 1: of Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination

E. Gonzalez (4991489)
F. Pitre (4991495)
A. PagĂŠ (4991522)
J. Marleau (4991507)
W. Guidi Nissim (4991504)
M. St-Arnaud (4991501)
M. Labrecque (4991498)
S. Joly (4991510)
E. Yergeau (4991516)
N. Brereton (4991513)

March 2018

Unknown sequence challenge, upregulated DE Basidiomycota blastn and additional transcriptomic method...

Additional file 1: of Comparison of microbial taxonomic and functional shift pattern along contamination gradient

Youhua Ren (3520982)
Jiaojiao Niu (3399815)
Wenkun Huang (541498)
Deliang Peng (541496)
Yunhua Xiao (579965)
Xian Zhang (191440)
Yili Liang (234215)
Xueduan Liu (519039)
Huaqun Yin (519037)

June 2016

Table S1. Sediment properties and ANOVA analysis among three groups. Table S2. Shannon diversity and...

Additional file 1: of Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

Kyle Hartman (3661840)
Marcel van der Heijden (3294294)
Raphaël Wittwer (4773426)
Samiran Banerjee (4773429)
Jean-Claude Walser (274515)
Klaus Schlaeppi (3661843)

January 2018

A PDF containing supplementary methods, results, discussion, references, figures and tables. The Sup...

The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi
Mingcong Li
Guangshan Wei
Renmao Tian
Cuiping Li
Bing Wang
Rongshan Lin
Chunyu Shi
Xiuli Chi
Bo Zhou
Zheng Gao

February 2019

Abstract Background Soil microorganisms can mediate the occurrence of plant diseases. Potato common ...

Additional file 1: of Composition and predictive functional analysis of bacterial communities inhabiting Chinese Cordyceps insight into conserved core microbiome

Fei Xia (256985)
Xin Zhou (54275)
Yan Liu (25061)
Yuling Li (290240)
Xiaohui Bai (141860)
Xuanwei Zhou (6731303)

May 2019

Figure S1. Rarefaction curves of bacterial community inhabiting Chinese Cordyceps collected from fiv...

Additional file 2: of Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Estelle Couradeau (192890)
Ana Giraldo-Silva (6553622)
Francesca De Martini (6553625)
Ferran Garcia-Pichel (257121)

April 2019

Table S1. Summary of SSU rRNA gene libraries analyzed from HSN and FB sample set and associated cove...

Additional file 3: of Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status

Hazem Sharaf (141262)
Richard Rodrigues (6594737)
Jinyoung Moon (6594740)
Bo Zhang (6559)
Kerri Mills (6594743)
Mark Williams (62100)

April 2019

Dataset 1. Subset of the nifH database that was used to assign taxonomy and build the phylogenetic t...

Additional file 1: of Microbial community drivers of PK/NRP gene diversity in selected global soils

Chiara Borsetto (799041)
Gregory Amos (6726596)
Ulisses Rocha (6726599)
Alex Mitchell (57615)
Robert Finn (6726602)
Rabah Laidi (6726605)
Carlos Vallin (5665333)
David Pearce (266729)
Kevin Newsham (6726608)
Elizabeth Wellington (1475956)

May 2019

Table S1. Characteristics and GPS coordinates of soils used in this study. Table S2. Primers and con...

Additional file 3: of Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Estelle Couradeau (192890)
Ana Giraldo-Silva (6553622)
Francesca De Martini (6553625)
Ferran Garcia-Pichel (257121)

April 2019

Table S4. Taxonomic assignment and functional inferences based on phylogenetic placement for segrega...

Additional file 3: of Skin and gut microbiomes of a wild mammal respond to different environmental cues

Anton Lavrinienko (5699762)
Eugene Tukalenko (5699765)
Tapio Mappes (208603)
Phillip Watts (541434)

November 2018

Relative abundance (average of taxonomic groups abundance within each sample) of Phyla, Classes, Ord...

Additional file 5: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic bacterial taxonomic profiling (at genus level) (separated from...

Additional file 4: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic microbial taxonomic profiling (at genus level) (XLS 356 kb

Additional file 8: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic microbial function profiling (KEGG orthology function category...

Additional file 7: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Estimated absolute abundance (EAA) of the metagenomic bacterial taxonomic profiling (at genus level)...

Additional file 1: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Figure S1. Summary of sampling in this study. The sampling field (34.248727°N, 119.816724°E, 22.9 m ...

Additional file 1: of Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination

E. Gonzalez (4991489)
F. Pitre (4991495)
A. PagĂŠ (4991522)
J. Marleau (4991507)
W. Guidi Nissim (4991504)
M. St-Arnaud (4991501)
M. Labrecque (4991498)
S. Joly (4991510)
E. Yergeau (4991516)
N. Brereton (4991513)

March 2018

Unknown sequence challenge, upregulated DE Basidiomycota blastn and additional transcriptomic method...

Additional file 1: of Comparison of microbial taxonomic and functional shift pattern along contamination gradient

Youhua Ren (3520982)
Jiaojiao Niu (3399815)
Wenkun Huang (541498)
Deliang Peng (541496)
Yunhua Xiao (579965)
Xian Zhang (191440)
Yili Liang (234215)
Xueduan Liu (519039)
Huaqun Yin (519037)

June 2016

Table S1. Sediment properties and ANOVA analysis among three groups. Table S2. Shannon diversity and...

Additional file 1: of Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

Kyle Hartman (3661840)
Marcel van der Heijden (3294294)
Raphaël Wittwer (4773426)
Samiran Banerjee (4773429)
Jean-Claude Walser (274515)
Klaus Schlaeppi (3661843)

January 2018

A PDF containing supplementary methods, results, discussion, references, figures and tables. The Sup...

The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi
Mingcong Li
Guangshan Wei
Renmao Tian
Cuiping Li
Bing Wang
Rongshan Lin
Chunyu Shi
Xiuli Chi
Bo Zhou
Zheng Gao

February 2019

Abstract Background Soil microorganisms can mediate the occurrence of plant diseases. Potato common ...

Additional file 1: of Composition and predictive functional analysis of bacterial communities inhabiting Chinese Cordyceps insight into conserved core microbiome

Fei Xia (256985)
Xin Zhou (54275)
Yan Liu (25061)
Yuling Li (290240)
Xiaohui Bai (141860)
Xuanwei Zhou (6731303)

May 2019

Figure S1. Rarefaction curves of bacterial community inhabiting Chinese Cordyceps collected from fiv...

Additional file 2: of Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Estelle Couradeau (192890)
Ana Giraldo-Silva (6553622)
Francesca De Martini (6553625)
Ferran Garcia-Pichel (257121)

April 2019

Table S1. Summary of SSU rRNA gene libraries analyzed from HSN and FB sample set and associated cove...

Additional file 3: of Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status

Hazem Sharaf (141262)
Richard Rodrigues (6594737)
Jinyoung Moon (6594740)
Bo Zhang (6559)
Kerri Mills (6594743)
Mark Williams (62100)

April 2019

Dataset 1. Subset of the nifH database that was used to assign taxonomy and build the phylogenetic t...

Additional file 1: of Microbial community drivers of PK/NRP gene diversity in selected global soils

Chiara Borsetto (799041)
Gregory Amos (6726596)
Ulisses Rocha (6726599)
Alex Mitchell (57615)
Robert Finn (6726602)
Rabah Laidi (6726605)
Carlos Vallin (5665333)
David Pearce (266729)
Kevin Newsham (6726608)
Elizabeth Wellington (1475956)

May 2019

Table S1. Characteristics and GPS coordinates of soils used in this study. Table S2. Primers and con...

Additional file 3: of Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Estelle Couradeau (192890)
Ana Giraldo-Silva (6553622)
Francesca De Martini (6553625)
Ferran Garcia-Pichel (257121)

April 2019

Table S4. Taxonomic assignment and functional inferences based on phylogenetic placement for segrega...

Additional file 3: of Skin and gut microbiomes of a wild mammal respond to different environmental cues

Anton Lavrinienko (5699762)
Eugene Tukalenko (5699765)
Tapio Mappes (208603)
Phillip Watts (541434)

November 2018

Relative abundance (average of taxonomic groups abundance within each sample) of Phyla, Classes, Ord...

Additional file 3: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Abstract

Extracted data

Additional file 3: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Abstract

Extracted data

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