Additional file 5: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Additional file 1: of Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

Kyle Hartman (3661840)
Marcel van der Heijden (3294294)
Raphaël Wittwer (4773426)
Samiran Banerjee (4773429)
Jean-Claude Walser (274515)
Klaus Schlaeppi (3661843)

January 2018

A PDF containing supplementary methods, results, discussion, references, figures and tables. The Sup...

Additional file 1: Figure S1. of MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes

Pavel Petrenko (3401234)
Briallen Lobb (3401240)
Daniel Kurtz (3401246)
Josh Neufeld (3401243)
Andrew Doxey (3401237)

November 2015

MetAnnotate estimates microbial community abundance with high accuracy, demonstrated by estimated cl...

Community Analysis of Root- and Tuber-Associated Bacteria in Field-Grown Potato Plants Harboring Different Resistance Levels against Common Scab

Akira Kobayashi
Yuki Ohdaira Kobayashi
Nobutaka Someya
Seishi Ikeda

January 2015

Eight genotypes of potato plants with different resistance levels against common scab were grown in ...

Additional file 4: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic microbial taxonomic profiling (at genus level) (XLS 356 kb

Additional file 7: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Estimated absolute abundance (EAA) of the metagenomic bacterial taxonomic profiling (at genus level)...

Additional file 8: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic microbial function profiling (KEGG orthology function category...

Additional file 3: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Sequence read numbers of the bacterial OTUs profiling (sequenced on a MiSeq PE250 sequencer at a dep...

Additional file 1: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Figure S1. Summary of sampling in this study. The sampling field (34.248727°N, 119.816724°E, 22.9 m ...

The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi
Mingcong Li
Guangshan Wei
Renmao Tian
Cuiping Li
Bing Wang
Rongshan Lin
Chunyu Shi
Xiuli Chi
Bo Zhou
Zheng Gao

February 2019

Abstract Background Soil microorganisms can mediate the occurrence of plant diseases. Potato common ...

Additional file 7: Table S3. of Temporal dynamics in microbial soil communities at anthrax carcass sites

Karoline Valseth (4470688)
Camilla NesbĂ¸ (4470682)
W. Easterday (4470679)
Wendy Turner (4470673)
Jaran Olsen (4470685)
Nils Stenseth (4470676)
Thomas Haverkamp (4470691)

September 2017

Comparison of taxonomic classification with four different methods: MetaBIT, Metaxa2, MEGAN, and Kra...

Additional file 2: of Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Estelle Couradeau (192890)
Ana Giraldo-Silva (6553622)
Francesca De Martini (6553625)
Ferran Garcia-Pichel (257121)

April 2019

Table S1. Summary of SSU rRNA gene libraries analyzed from HSN and FB sample set and associated cove...

The divergence of bacterial communities among continuous cropping, rotational cropping and new planting potato soils

Qiulong HU

October 2019

Figure S1: Rarefaction curves of soil bacteria in CC, RC and NP potato soils, Table S1: Dissimilarit...

Additional file 1 of The succession pattern of soil microbial communities and its relationship with tobacco bacterial wilt

Jiaojiao Niu (3399815)
Zhongwen Rang (3529211)
Chao Zhang (51048)
Wu Chen (569414)
Feng Tian (121350)
Huaqun Yin (519037)
Linjian Dai (3529214)

October 2016

Figure S1. Rarefaction curves of 16r RNA gene sequencing data. Figure S2. Composition and structure ...

Additional file 1: of Composition and predictive functional analysis of bacterial communities inhabiting Chinese Cordyceps insight into conserved core microbiome

Fei Xia (256985)
Xin Zhou (54275)
Yan Liu (25061)
Yuling Li (290240)
Xiaohui Bai (141860)
Xuanwei Zhou (6731303)

May 2019

Figure S1. Rarefaction curves of bacterial community inhabiting Chinese Cordyceps collected from fiv...

Additional file 3: of Metagenome-scale analysis yields insights into the structure and function of microbial communities in a copper bioleaching heap

Xian Zhang (191440)
Jiaojiao Niu (3399815)
Yili Liang (234215)
Xueduan Liu (519039)
Huaqun Yin (519037)

January 2016

The viral composition in the metagenome collected from bioleaching heap. (TIF 423 kb

Additional file 1: of Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

Kyle Hartman (3661840)
Marcel van der Heijden (3294294)
Raphaël Wittwer (4773426)
Samiran Banerjee (4773429)
Jean-Claude Walser (274515)
Klaus Schlaeppi (3661843)

January 2018

A PDF containing supplementary methods, results, discussion, references, figures and tables. The Sup...

Additional file 1: Figure S1. of MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes

Pavel Petrenko (3401234)
Briallen Lobb (3401240)
Daniel Kurtz (3401246)
Josh Neufeld (3401243)
Andrew Doxey (3401237)

November 2015

MetAnnotate estimates microbial community abundance with high accuracy, demonstrated by estimated cl...

Community Analysis of Root- and Tuber-Associated Bacteria in Field-Grown Potato Plants Harboring Different Resistance Levels against Common Scab

Akira Kobayashi
Yuki Ohdaira Kobayashi
Nobutaka Someya
Seishi Ikeda

January 2015

Eight genotypes of potato plants with different resistance levels against common scab were grown in ...

Additional file 4: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic microbial taxonomic profiling (at genus level) (XLS 356 kb

Additional file 7: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Estimated absolute abundance (EAA) of the metagenomic bacterial taxonomic profiling (at genus level)...

Additional file 8: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Relative abundance of the metagenomic microbial function profiling (KEGG orthology function category...

Additional file 3: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Sequence read numbers of the bacterial OTUs profiling (sequenced on a MiSeq PE250 sequencer at a dep...

Additional file 1: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi (6289784)
Mingcong Li (795131)
Guangshan Wei (795132)
Renmao Tian (3244935)
Cuiping Li (671025)
Bing Wang (126120)
Rongshan Lin (6289787)
Chunyu Shi (179082)
Xiuli Chi (6289790)
Bo Zhou (15092)
Zheng Gao (592134)

February 2019

Figure S1. Summary of sampling in this study. The sampling field (34.248727°N, 119.816724°E, 22.9 m ...

The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Wencong Shi
Mingcong Li
Guangshan Wei
Renmao Tian
Cuiping Li
Bing Wang
Rongshan Lin
Chunyu Shi
Xiuli Chi
Bo Zhou
Zheng Gao

February 2019

Abstract Background Soil microorganisms can mediate the occurrence of plant diseases. Potato common ...

Additional file 7: Table S3. of Temporal dynamics in microbial soil communities at anthrax carcass sites

Karoline Valseth (4470688)
Camilla NesbĂ¸ (4470682)
W. Easterday (4470679)
Wendy Turner (4470673)
Jaran Olsen (4470685)
Nils Stenseth (4470676)
Thomas Haverkamp (4470691)

September 2017

Comparison of taxonomic classification with four different methods: MetaBIT, Metaxa2, MEGAN, and Kra...

Additional file 2: of Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Estelle Couradeau (192890)
Ana Giraldo-Silva (6553622)
Francesca De Martini (6553625)
Ferran Garcia-Pichel (257121)

April 2019

Table S1. Summary of SSU rRNA gene libraries analyzed from HSN and FB sample set and associated cove...

The divergence of bacterial communities among continuous cropping, rotational cropping and new planting potato soils

Qiulong HU

October 2019

Figure S1: Rarefaction curves of soil bacteria in CC, RC and NP potato soils, Table S1: Dissimilarit...

Additional file 1 of The succession pattern of soil microbial communities and its relationship with tobacco bacterial wilt

Jiaojiao Niu (3399815)
Zhongwen Rang (3529211)
Chao Zhang (51048)
Wu Chen (569414)
Feng Tian (121350)
Huaqun Yin (519037)
Linjian Dai (3529214)

October 2016

Figure S1. Rarefaction curves of 16r RNA gene sequencing data. Figure S2. Composition and structure ...

Additional file 1: of Composition and predictive functional analysis of bacterial communities inhabiting Chinese Cordyceps insight into conserved core microbiome

Fei Xia (256985)
Xin Zhou (54275)
Yan Liu (25061)
Yuling Li (290240)
Xiaohui Bai (141860)
Xuanwei Zhou (6731303)

May 2019

Figure S1. Rarefaction curves of bacterial community inhabiting Chinese Cordyceps collected from fiv...

Additional file 3: of Metagenome-scale analysis yields insights into the structure and function of microbial communities in a copper bioleaching heap

Xian Zhang (191440)
Jiaojiao Niu (3399815)
Yili Liang (234215)
Xueduan Liu (519039)
Huaqun Yin (519037)

January 2016

The viral composition in the metagenome collected from bioleaching heap. (TIF 423 kb

Additional file 1: of Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

Kyle Hartman (3661840)
Marcel van der Heijden (3294294)
Raphaël Wittwer (4773426)
Samiran Banerjee (4773429)
Jean-Claude Walser (274515)
Klaus Schlaeppi (3661843)

January 2018

A PDF containing supplementary methods, results, discussion, references, figures and tables. The Sup...

Additional file 1: Figure S1. of MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes

Pavel Petrenko (3401234)
Briallen Lobb (3401240)
Daniel Kurtz (3401246)
Josh Neufeld (3401243)
Andrew Doxey (3401237)

November 2015

MetAnnotate estimates microbial community abundance with high accuracy, demonstrated by estimated cl...

Community Analysis of Root- and Tuber-Associated Bacteria in Field-Grown Potato Plants Harboring Different Resistance Levels against Common Scab

Akira Kobayashi
Yuki Ohdaira Kobayashi
Nobutaka Someya
Seishi Ikeda

January 2015

Eight genotypes of potato plants with different resistance levels against common scab were grown in ...

Additional file 5: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Abstract

Extracted data

Additional file 5: of The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

Abstract

Extracted data

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