Additional file 7: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Additional file 14: of Genes and functions from breast cancer signatures

Shujun Huang (4736610)
Leigh Murphy (4736604)
Wayne Xu (139880)

April 2018

Figure S6. Building TNBC subtyping classifier in METABRIC using common genes from TNBC signature gro...

Additional file 5: of Evaluation of BRCA1-related molecular features and microRNAs as prognostic factors for triple negative breast cancers

Meriem Boukerroucha (3538598)
Claire Josse (3538607)
Sonia ElGuendi (3538595)
Bouchra Boujemla (3538610)
Pierre Frères (3538601)
Raphaël Marée (32623)
Stephane Wenric (3538613)
Karin Segers (3538604)
Joelle Collignon (3538616)
Guy Jerusalem (790867)
Vincent Bours (96245)

October 2015

BRCA1 promoter methylation. A. Kaplan Meier curves showing the lack of relationship of BRCA1 promote...

Additional file 1: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Figure S1. Box plot showing the methylation levels of 14 genes in the control and luminal breast can...

Additional file 6: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Mean differences in methylation levels according to clinicopathological prognostic factors in both c...

Additional file 2: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Thirty-five differentially methylated CpGs between responders and non-responders group selected from...

Additional file 1: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

List of all the biological processes enriched for the 71 differentially methylated genes between res...

Additional file 3: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Eleven differentially methylated CpGs, corresponding to 11 genes, showed significant methylation dif...

Additional file 8: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Sequence of primers used by pyrosequencing in the validation assay of candidate genes obtained from ...

Additional file 5: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Representation of the pathway interaction network of FERD3L and TRIP10 with other genes using Pathwa...

Additional file 1: Figure S1. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

BRCA1 gene expression, measured by RT-PCR, for BRCA1-methylated, mutated and non-mutated/non-methyla...

Additional file 2: Table S1. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

1977 Cancer Gene Panel. This file lists all 1,977 genes in the Cancer Gene Panel, used in this study...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 7: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S6. Results of pan-cancer analyses of differential gene expression of PRAC2, TDRD10 and TMEM13...

A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Pineda, Begoña
Diaz-Lagares, Angel
Pérez-Fidalgo, José Alejandro
Burgués, Octavio
González-Barrallo, Inés
Crujeiras, Ana B.
Sandoval, Juan
Esteller, Manel
Lluch Hernández, Ana
Eroles, Pilar

November 2020

Background: pathological complete response (pCR) after neoadjuvant chemotherapy (NAC) in triple-nega...

Additional file 4: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Song Yao (202481)
Qiang Hu (122686)
Sarah Kerns (6456668)
Li Yan (107001)
Adedayo Onitilo (6456671)
Jamal Misleh (6456674)
Kelley Young (6456677)
Lianlian Lei (3739801)
Javier Bautista (6456680)
Mostafa Mohamed (6456683)
Supriya Mohile (6456686)
Christine Ambrosone (334756)
Song Liu (9858)
Michelle Janelsins (6456692)

March 2019

Table S1. Descriptive characteristics of breast cancer cases and non-cancer controls. (DOCX 17 kb

Additional file 14: of Genes and functions from breast cancer signatures

Shujun Huang (4736610)
Leigh Murphy (4736604)
Wayne Xu (139880)

April 2018

Figure S6. Building TNBC subtyping classifier in METABRIC using common genes from TNBC signature gro...

Additional file 5: of Evaluation of BRCA1-related molecular features and microRNAs as prognostic factors for triple negative breast cancers

Meriem Boukerroucha (3538598)
Claire Josse (3538607)
Sonia ElGuendi (3538595)
Bouchra Boujemla (3538610)
Pierre Frères (3538601)
Raphaël Marée (32623)
Stephane Wenric (3538613)
Karin Segers (3538604)
Joelle Collignon (3538616)
Guy Jerusalem (790867)
Vincent Bours (96245)

October 2015

BRCA1 promoter methylation. A. Kaplan Meier curves showing the lack of relationship of BRCA1 promote...

Additional file 1: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Figure S1. Box plot showing the methylation levels of 14 genes in the control and luminal breast can...

Additional file 6: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Mean differences in methylation levels according to clinicopathological prognostic factors in both c...

Additional file 2: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Thirty-five differentially methylated CpGs between responders and non-responders group selected from...

Additional file 1: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

List of all the biological processes enriched for the 71 differentially methylated genes between res...

Additional file 3: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Eleven differentially methylated CpGs, corresponding to 11 genes, showed significant methylation dif...

Additional file 8: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Sequence of primers used by pyrosequencing in the validation assay of candidate genes obtained from ...

Additional file 5: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Representation of the pathway interaction network of FERD3L and TRIP10 with other genes using Pathwa...

Additional file 1: Figure S1. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

BRCA1 gene expression, measured by RT-PCR, for BRCA1-methylated, mutated and non-mutated/non-methyla...

Additional file 2: Table S1. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

1977 Cancer Gene Panel. This file lists all 1,977 genes in the Cancer Gene Panel, used in this study...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 7: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S6. Results of pan-cancer analyses of differential gene expression of PRAC2, TDRD10 and TMEM13...

A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Pineda, Begoña
Diaz-Lagares, Angel
Pérez-Fidalgo, José Alejandro
Burgués, Octavio
González-Barrallo, Inés
Crujeiras, Ana B.
Sandoval, Juan
Esteller, Manel
Lluch Hernández, Ana
Eroles, Pilar

November 2020

Background: pathological complete response (pCR) after neoadjuvant chemotherapy (NAC) in triple-nega...

Additional file 4: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Song Yao (202481)
Qiang Hu (122686)
Sarah Kerns (6456668)
Li Yan (107001)
Adedayo Onitilo (6456671)
Jamal Misleh (6456674)
Kelley Young (6456677)
Lianlian Lei (3739801)
Javier Bautista (6456680)
Mostafa Mohamed (6456683)
Supriya Mohile (6456686)
Christine Ambrosone (334756)
Song Liu (9858)
Michelle Janelsins (6456692)

March 2019

Table S1. Descriptive characteristics of breast cancer cases and non-cancer controls. (DOCX 17 kb

Additional file 14: of Genes and functions from breast cancer signatures

Shujun Huang (4736610)
Leigh Murphy (4736604)
Wayne Xu (139880)

April 2018

Figure S6. Building TNBC subtyping classifier in METABRIC using common genes from TNBC signature gro...

Additional file 5: of Evaluation of BRCA1-related molecular features and microRNAs as prognostic factors for triple negative breast cancers

Meriem Boukerroucha (3538598)
Claire Josse (3538607)
Sonia ElGuendi (3538595)
Bouchra Boujemla (3538610)
Pierre Frères (3538601)
Raphaël Marée (32623)
Stephane Wenric (3538613)
Karin Segers (3538604)
Joelle Collignon (3538616)
Guy Jerusalem (790867)
Vincent Bours (96245)

October 2015

BRCA1 promoter methylation. A. Kaplan Meier curves showing the lack of relationship of BRCA1 promote...

Additional file 1: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Figure S1. Box plot showing the methylation levels of 14 genes in the control and luminal breast can...

Additional file 7: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Abstract

Extracted data

Additional file 7: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Abstract

Extracted data

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