Additional file 4: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Additional file 6: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S5. Results of OncoScore analyses for the 164 differentially-methylated and differentially-exp...

Additional file 1: of DNA methylation holds prognostic information in relapsed precursor B-cell acute lymphoblastic leukemia

Magnus Borssén (419233)
Jessica Nordlund (172693)
Zahra Haider (4913311)
Mattias Landfors (195135)
Pär Larsson (171191)
Jukka Kanerva (4913308)
Kjeld Schmiegelow (3633592)
Trond Flaegstad (4721907)
Ólafur Jónsson (4913305)
Britt-Marie Frost (4913299)
Josefine Palle (4913302)
Erik Forestier (419238)
Mats Heyman (4354924)
Magnus Hultdin (245971)
Gudmar Lönnerholm (172700)
Sofie Degerman (419239)

March 2018

Methods description, figures, and tables can be found at the Clinical Epigenetics webpage. (DOCX 282...

Additional file 4: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S3. List of CpGs located in genes that are differentially expressed between breast cancer and ...

Additional file 2: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Song Yao (202481)
Qiang Hu (122686)
Sarah Kerns (6456668)
Li Yan (107001)
Adedayo Onitilo (6456671)
Jamal Misleh (6456674)
Kelley Young (6456677)
Lianlian Lei (3739801)
Javier Bautista (6456680)
Mostafa Mohamed (6456683)
Supriya Mohile (6456686)
Christine Ambrosone (334756)
Song Liu (9858)
Michelle Janelsins (6456692)

March 2019

Table S2. Summary statistics of the 568 CpGs which remain significantly altered by chemotherapy afte...

Additional file 3: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Song Yao (202481)
Qiang Hu (122686)
Sarah Kerns (6456668)
Li Yan (107001)
Adedayo Onitilo (6456671)
Jamal Misleh (6456674)
Kelley Young (6456677)
Lianlian Lei (3739801)
Javier Bautista (6456680)
Mostafa Mohamed (6456683)
Supriya Mohile (6456686)
Christine Ambrosone (334756)
Song Liu (9858)
Michelle Janelsins (6456692)

March 2019

Table S3. Pathway enrichment analysis of significant CpG sites altered between pre- and post-chemoth...

Additional file 1: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Song Yao (202481)
Qiang Hu (122686)
Sarah Kerns (6456668)
Li Yan (107001)
Adedayo Onitilo (6456671)
Jamal Misleh (6456674)
Kelley Young (6456677)
Lianlian Lei (3739801)
Javier Bautista (6456680)
Mostafa Mohamed (6456683)
Supriya Mohile (6456686)
Christine Ambrosone (334756)
Song Liu (9858)
Michelle Janelsins (6456692)

March 2019

Figure S1. Changes in leukocyte composition before and after chemotherapy by treatment regimen, grow...

Additional file 1: of Blood DNA methylation and breast cancer risk: a meta-analysis of four prospective cohort studies

Clara Bodelon (106771)
Srikant Ambatipudi (228815)
Pierre-Antoine DuguĂŠ (4745514)
Annelie Johansson (6652820)
Joshua Sampson (3466985)
Belynda Hicks (3385295)
Eric Karlins (395884)
Amy Hutchinson (106802)
Cyrille Cuenin (487673)
Veronique ChajĂ¨s (6652832)
Melissa Southey (81752)
Isabelle Romieu (115136)
Graham Giles (521929)
Dallas English (3421334)
Silvia Polidoro (151290)
Manuela Assumma (6712148)
Laura Baglietto (89917)
Paolo Vineis (115119)
Gianluca Severi (89918)
Zdenko Herceg (251863)
James Flanagan (13713)
Roger Milne (260033)
Montserrat Garcia-Closas (89866)

May 2019

Description of the four prospective studies. Also, a figure with the results of the association betw...

Additional file 1: of DNA methylation signatures of breast cancer in peripheral T-cells

Surabhi Parashar (5237711)
David Cheishvili (554749)
Niaz Mahmood (5237702)
Ani Arakelian (5237708)
Imrana Tanvir (5237717)
Haseeb Khan (5237705)
Richard Kremer (5237714)
Catalin Mihalcioiu (3994973)
Moshe Szyf (228712)
Shafaat Rabbani (5237720)

May 2018

Table S1. Clinical table of normal individuals and cancer patients. Table S2. Primer sequences. Tabl...

Additional file 1: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S1. List of CpGs differently methylated between breast cancer and matched-normal samples. (XLS...

Additional file 5: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S4. List of genes differently expressed between normal and tumor METABRIC samples and with con...

Additional file 1: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Figure S1. Box plot showing the methylation levels of 14 genes in the control and luminal breast can...

Additional file 1: Table S1. of Assessment of DNA methylation profiling and copy number variation as indications of clonal relationship in ipsilateral and contralateral breast cancers to distinguish recurrent breast cancer from a second primary tumour

Katie Huang (3420263)
Thomas Mikeska (274849)
Jason Li (23213)
Elena Takano (3420257)
Ewan Millar (3420266)
Peter Graham (831821)
Samantha Boyle (562679)
Ian Campbell (205212)
Terence Speed (3420260)
Alexander Dobrovic (8304)
Stephen Fox (152886)

October 2015

Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...

Additional file 6: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Mean differences in methylation levels according to clinicopathological prognostic factors in both c...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 3: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Eleven differentially methylated CpGs, corresponding to 11 genes, showed significant methylation dif...

Additional file 6: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S5. Results of OncoScore analyses for the 164 differentially-methylated and differentially-exp...

Additional file 1: of DNA methylation holds prognostic information in relapsed precursor B-cell acute lymphoblastic leukemia

Magnus Borssén (419233)
Jessica Nordlund (172693)
Zahra Haider (4913311)
Mattias Landfors (195135)
Pär Larsson (171191)
Jukka Kanerva (4913308)
Kjeld Schmiegelow (3633592)
Trond Flaegstad (4721907)
Ólafur Jónsson (4913305)
Britt-Marie Frost (4913299)
Josefine Palle (4913302)
Erik Forestier (419238)
Mats Heyman (4354924)
Magnus Hultdin (245971)
Gudmar Lönnerholm (172700)
Sofie Degerman (419239)

March 2018

Methods description, figures, and tables can be found at the Clinical Epigenetics webpage. (DOCX 282...

Additional file 4: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S3. List of CpGs located in genes that are differentially expressed between breast cancer and ...

Additional file 2: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Song Yao (202481)
Qiang Hu (122686)
Sarah Kerns (6456668)
Li Yan (107001)
Adedayo Onitilo (6456671)
Jamal Misleh (6456674)
Kelley Young (6456677)
Lianlian Lei (3739801)
Javier Bautista (6456680)
Mostafa Mohamed (6456683)
Supriya Mohile (6456686)
Christine Ambrosone (334756)
Song Liu (9858)
Michelle Janelsins (6456692)

March 2019

Table S2. Summary statistics of the 568 CpGs which remain significantly altered by chemotherapy afte...

Additional file 3: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Song Yao (202481)
Qiang Hu (122686)
Sarah Kerns (6456668)
Li Yan (107001)
Adedayo Onitilo (6456671)
Jamal Misleh (6456674)
Kelley Young (6456677)
Lianlian Lei (3739801)
Javier Bautista (6456680)
Mostafa Mohamed (6456683)
Supriya Mohile (6456686)
Christine Ambrosone (334756)
Song Liu (9858)
Michelle Janelsins (6456692)

March 2019

Table S3. Pathway enrichment analysis of significant CpG sites altered between pre- and post-chemoth...

Additional file 1: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Song Yao (202481)
Qiang Hu (122686)
Sarah Kerns (6456668)
Li Yan (107001)
Adedayo Onitilo (6456671)
Jamal Misleh (6456674)
Kelley Young (6456677)
Lianlian Lei (3739801)
Javier Bautista (6456680)
Mostafa Mohamed (6456683)
Supriya Mohile (6456686)
Christine Ambrosone (334756)
Song Liu (9858)
Michelle Janelsins (6456692)

March 2019

Figure S1. Changes in leukocyte composition before and after chemotherapy by treatment regimen, grow...

Additional file 1: of Blood DNA methylation and breast cancer risk: a meta-analysis of four prospective cohort studies

Clara Bodelon (106771)
Srikant Ambatipudi (228815)
Pierre-Antoine DuguĂŠ (4745514)
Annelie Johansson (6652820)
Joshua Sampson (3466985)
Belynda Hicks (3385295)
Eric Karlins (395884)
Amy Hutchinson (106802)
Cyrille Cuenin (487673)
Veronique ChajĂ¨s (6652832)
Melissa Southey (81752)
Isabelle Romieu (115136)
Graham Giles (521929)
Dallas English (3421334)
Silvia Polidoro (151290)
Manuela Assumma (6712148)
Laura Baglietto (89917)
Paolo Vineis (115119)
Gianluca Severi (89918)
Zdenko Herceg (251863)
James Flanagan (13713)
Roger Milne (260033)
Montserrat Garcia-Closas (89866)

May 2019

Description of the four prospective studies. Also, a figure with the results of the association betw...

Additional file 1: of DNA methylation signatures of breast cancer in peripheral T-cells

Surabhi Parashar (5237711)
David Cheishvili (554749)
Niaz Mahmood (5237702)
Ani Arakelian (5237708)
Imrana Tanvir (5237717)
Haseeb Khan (5237705)
Richard Kremer (5237714)
Catalin Mihalcioiu (3994973)
Moshe Szyf (228712)
Shafaat Rabbani (5237720)

May 2018

Table S1. Clinical table of normal individuals and cancer patients. Table S2. Primer sequences. Tabl...

Additional file 1: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S1. List of CpGs differently methylated between breast cancer and matched-normal samples. (XLS...

Additional file 5: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S4. List of genes differently expressed between normal and tumor METABRIC samples and with con...

Additional file 1: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Figure S1. Box plot showing the methylation levels of 14 genes in the control and luminal breast can...

Additional file 1: Table S1. of Assessment of DNA methylation profiling and copy number variation as indications of clonal relationship in ipsilateral and contralateral breast cancers to distinguish recurrent breast cancer from a second primary tumour

Katie Huang (3420263)
Thomas Mikeska (274849)
Jason Li (23213)
Elena Takano (3420257)
Ewan Millar (3420266)
Peter Graham (831821)
Samantha Boyle (562679)
Ian Campbell (205212)
Terence Speed (3420260)
Alexander Dobrovic (8304)
Stephen Fox (152886)

October 2015

Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...

Additional file 6: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Mean differences in methylation levels according to clinicopathological prognostic factors in both c...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 3: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Eleven differentially methylated CpGs, corresponding to 11 genes, showed significant methylation dif...

Additional file 6: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S5. Results of OncoScore analyses for the 164 differentially-methylated and differentially-exp...

Additional file 1: of DNA methylation holds prognostic information in relapsed precursor B-cell acute lymphoblastic leukemia

Magnus Borssén (419233)
Jessica Nordlund (172693)
Zahra Haider (4913311)
Mattias Landfors (195135)
Pär Larsson (171191)
Jukka Kanerva (4913308)
Kjeld Schmiegelow (3633592)
Trond Flaegstad (4721907)
Ólafur Jónsson (4913305)
Britt-Marie Frost (4913299)
Josefine Palle (4913302)
Erik Forestier (419238)
Mats Heyman (4354924)
Magnus Hultdin (245971)
Gudmar Lönnerholm (172700)
Sofie Degerman (419239)

March 2018

Methods description, figures, and tables can be found at the Clinical Epigenetics webpage. (DOCX 282...

Additional file 4: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S3. List of CpGs located in genes that are differentially expressed between breast cancer and ...

Additional file 4: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Abstract

Extracted data

Additional file 4: of Impact of chemotherapy for breast cancer on leukocyte DNA methylation landscape and cognitive function: a prospective study

Abstract

Extracted data

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