Additional file 6: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Additional file 6: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Table S1. Clinical information of 210 luminal breast cancer samples. (XLSX 10 kb

Additional file 5: of Evaluation of BRCA1-related molecular features and microRNAs as prognostic factors for triple negative breast cancers

Meriem Boukerroucha (3538598)
Claire Josse (3538607)
Sonia ElGuendi (3538595)
Bouchra Boujemla (3538610)
Pierre Frères (3538601)
Raphaël Marée (32623)
Stephane Wenric (3538613)
Karin Segers (3538604)
Joelle Collignon (3538616)
Guy Jerusalem (790867)
Vincent Bours (96245)

October 2015

BRCA1 promoter methylation. A. Kaplan Meier curves showing the lack of relationship of BRCA1 promote...

Additional file 7: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S6. Results of pan-cancer analyses of differential gene expression of PRAC2, TDRD10 and TMEM13...

Additional file 7: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Clinical inclusion and exclusion criteria followed to select TNBC patients for the methylation study...

Additional file 2: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Thirty-five differentially methylated CpGs between responders and non-responders group selected from...

Additional file 1: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

List of all the biological processes enriched for the 71 differentially methylated genes between res...

Additional file 3: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Eleven differentially methylated CpGs, corresponding to 11 genes, showed significant methylation dif...

Additional file 8: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Sequence of primers used by pyrosequencing in the validation assay of candidate genes obtained from ...

Additional file 5: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Representation of the pathway interaction network of FERD3L and TRIP10 with other genes using Pathwa...

Additional file 6: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S5. Results of OncoScore analyses for the 164 differentially-methylated and differentially-exp...

Additional file 1: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S1. List of CpGs differently methylated between breast cancer and matched-normal samples. (XLS...

Additional file 5: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S4. List of genes differently expressed between normal and tumor METABRIC samples and with con...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 1: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Figure S1. Box plot showing the methylation levels of 14 genes in the control and luminal breast can...

Additional file 4: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S3. List of CpGs located in genes that are differentially expressed between breast cancer and ...

Additional file 6: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Table S1. Clinical information of 210 luminal breast cancer samples. (XLSX 10 kb

Additional file 5: of Evaluation of BRCA1-related molecular features and microRNAs as prognostic factors for triple negative breast cancers

Meriem Boukerroucha (3538598)
Claire Josse (3538607)
Sonia ElGuendi (3538595)
Bouchra Boujemla (3538610)
Pierre Frères (3538601)
Raphaël Marée (32623)
Stephane Wenric (3538613)
Karin Segers (3538604)
Joelle Collignon (3538616)
Guy Jerusalem (790867)
Vincent Bours (96245)

October 2015

BRCA1 promoter methylation. A. Kaplan Meier curves showing the lack of relationship of BRCA1 promote...

Additional file 7: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S6. Results of pan-cancer analyses of differential gene expression of PRAC2, TDRD10 and TMEM13...

Additional file 7: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Clinical inclusion and exclusion criteria followed to select TNBC patients for the methylation study...

Additional file 2: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Thirty-five differentially methylated CpGs between responders and non-responders group selected from...

Additional file 1: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

List of all the biological processes enriched for the 71 differentially methylated genes between res...

Additional file 3: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Eleven differentially methylated CpGs, corresponding to 11 genes, showed significant methylation dif...

Additional file 8: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Sequence of primers used by pyrosequencing in the validation assay of candidate genes obtained from ...

Additional file 5: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Begoña Pineda (103414)
Angel Diaz-Lagares (460733)
José Pérez-Fidalgo (6385592)
Octavio Burgués (6385595)
Inés González-Barrallo (6385598)
Ana Crujeiras (4861327)
Juan Sandoval (126196)
Manel Esteller (74345)
Ana Lluch (103419)
Pilar Eroles (103421)

February 2019

Representation of the pathway interaction network of FERD3L and TRIP10 with other genes using Pathwa...

Additional file 6: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S5. Results of OncoScore analyses for the 164 differentially-methylated and differentially-exp...

Additional file 1: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S1. List of CpGs differently methylated between breast cancer and matched-normal samples. (XLS...

Additional file 5: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S4. List of genes differently expressed between normal and tumor METABRIC samples and with con...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 1: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Figure S1. Box plot showing the methylation levels of 14 genes in the control and luminal breast can...

Additional file 4: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S3. List of CpGs located in genes that are differentially expressed between breast cancer and ...

Additional file 6: of Identification of methylation sites and signature genes with prognostic value for luminal breast cancer

Bin Xiao (146435)
Lidan Chen (5090975)
Yongli Ke (5090972)
Jianfeng Hang (2985864)
Ling Cao (304475)
Rong Zhang (44942)
Weiyun Zhang (131905)
Yang Liao (292677)
Yang Gao (18005)
Jianyun Chen (725586)
Li Li (14993)
Wenbo Hao (387710)
Zhaohui Sun (241817)
Linhai Li (4395022)

April 2018

Table S1. Clinical information of 210 luminal breast cancer samples. (XLSX 10 kb

Additional file 5: of Evaluation of BRCA1-related molecular features and microRNAs as prognostic factors for triple negative breast cancers

Meriem Boukerroucha (3538598)
Claire Josse (3538607)
Sonia ElGuendi (3538595)
Bouchra Boujemla (3538610)
Pierre Frères (3538601)
Raphaël Marée (32623)
Stephane Wenric (3538613)
Karin Segers (3538604)
Joelle Collignon (3538616)
Guy Jerusalem (790867)
Vincent Bours (96245)

October 2015

BRCA1 promoter methylation. A. Kaplan Meier curves showing the lack of relationship of BRCA1 promote...

Additional file 7: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S6. Results of pan-cancer analyses of differential gene expression of PRAC2, TDRD10 and TMEM13...

Additional file 6: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Abstract

Extracted data

Additional file 6: of A two-gene epigenetic signature for the prediction of response to neoadjuvant chemotherapy in triple-negative breast cancer patients

Abstract

Extracted data

Topics

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