Additional file 4: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Additional file 7: Table S3. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Gall formation of P. brassicae pathotypes on (A) selected B. napus and B. olereacea hosts and (B) se...

Additional file 5: Figure S4. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

The P. brassicae pathotype 6 shows extensive synteny with pathotype 3 with rare examples of small in...

Additional file 2: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Figure S1. Soft rot symptoms in Brassica rapa subsp. pekinensis (a), Brassica rapa subsp. chinensis ...

Additional file 3: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S3. The enrichment of GO terms of Plasmodiophora brassicae-expanded and P. brassicae-specific ...

Additional file 2: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S2. Comparative analysis of gene density of genome between Plasmodiophora brassicae ZJ-1 and o...

Additional file 1: of Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations

Michael Holtz (5107109)
Sheau-Fang Hwang (537882)
Stephen Strelkov (2409889)

April 2018

Clustering of Plasmodiophora brassicae samples based on discriminant analysis of principal component...

Additional file 2: of Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations

Michael Holtz (5107109)
Sheau-Fang Hwang (537882)
Stephen Strelkov (2409889)

April 2018

Genes containing genetic variants that caused nonsynonymous mutations and distinguished Plasmodiopho...

Additional file 4: of Proto-oncogenes in a eukaryotic unicellular organism play essential roles in plasmodial growth in host cells

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Yanping Fu (147148)
Jiasen Cheng (147154)
Jiatao Xie (147152)
Daohong Jiang (147157)

December 2018

Table S2. The genes involve in Cancers related pathways on the genome of P. brassicae and correspond...

Additional file 2: Table S1. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Assembly statistics for P. brassicae pathotypes 3 and 6 (Pb3, Pb6). (DOCX 13Â kb

Additional file 5: of Proto-oncogenes in a eukaryotic unicellular organism play essential roles in plasmodial growth in host cells

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Yanping Fu (147148)
Jiasen Cheng (147154)
Jiatao Xie (147152)
Daohong Jiang (147157)

December 2018

Table S3. The amino acid sequences encoded by genes involved in cancer-related signaling pathways in...

Additional file 17: Figure S9. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

The terpenoid biosynthesis pathway with enzymes encoded in the P. brassicae genome coloured green. (...

Additional file 1: of Genome-wide analysis and stress-responsive expression of CCCH zinc finger family genes in Brassica rapa

Boyi Pi (6158561)
Xinghui He (6158564)
Ying Ruan (6158567)
Jyan-Chyun Jang (3179142)
Yong Huang (15745)

December 2018

Detailed information of CCCH gene family in B.rapa. Sequences and information of CCCH genes and prot...

Computational analysis of the Plasmodiophora brassicae genome: mitochondrial sequence description and metabolic pathway database design

Daval, Stéphanie
Belcour, Arnaud
Gazengel, Kévin
Legrand, Ludovic
Gouzy, Jerome
Cottret, Ludovic
Lebreton, Lionel
Aigu, Yoann
Mougel, Christophe
Manzanares-Dauleux, Maria,

December 2019

International audiencePlasmodiophora brassicae is an obligate biotrophic pathogenic protist responsi...

Additional file 5: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Table S3. List of origin genes in B. rapa, B. nigra and amphidiploid genes in B. napus, B. juncea. H...

Additional file 8: Figure S5. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Graphical representation of the 59 SNP haplotypes discovered across 5 pathotypes (The e3 genome was ...

Additional file 7: Table S3. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Gall formation of P. brassicae pathotypes on (A) selected B. napus and B. olereacea hosts and (B) se...

Additional file 5: Figure S4. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

The P. brassicae pathotype 6 shows extensive synteny with pathotype 3 with rare examples of small in...

Additional file 2: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Figure S1. Soft rot symptoms in Brassica rapa subsp. pekinensis (a), Brassica rapa subsp. chinensis ...

Additional file 3: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S3. The enrichment of GO terms of Plasmodiophora brassicae-expanded and P. brassicae-specific ...

Additional file 2: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S2. Comparative analysis of gene density of genome between Plasmodiophora brassicae ZJ-1 and o...

Additional file 1: of Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations

Michael Holtz (5107109)
Sheau-Fang Hwang (537882)
Stephen Strelkov (2409889)

April 2018

Clustering of Plasmodiophora brassicae samples based on discriminant analysis of principal component...

Additional file 2: of Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations

Michael Holtz (5107109)
Sheau-Fang Hwang (537882)
Stephen Strelkov (2409889)

April 2018

Genes containing genetic variants that caused nonsynonymous mutations and distinguished Plasmodiopho...

Additional file 4: of Proto-oncogenes in a eukaryotic unicellular organism play essential roles in plasmodial growth in host cells

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Yanping Fu (147148)
Jiasen Cheng (147154)
Jiatao Xie (147152)
Daohong Jiang (147157)

December 2018

Table S2. The genes involve in Cancers related pathways on the genome of P. brassicae and correspond...

Additional file 2: Table S1. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Assembly statistics for P. brassicae pathotypes 3 and 6 (Pb3, Pb6). (DOCX 13Â kb

Additional file 5: of Proto-oncogenes in a eukaryotic unicellular organism play essential roles in plasmodial growth in host cells

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Yanping Fu (147148)
Jiasen Cheng (147154)
Jiatao Xie (147152)
Daohong Jiang (147157)

December 2018

Table S3. The amino acid sequences encoded by genes involved in cancer-related signaling pathways in...

Additional file 17: Figure S9. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

The terpenoid biosynthesis pathway with enzymes encoded in the P. brassicae genome coloured green. (...

Additional file 1: of Genome-wide analysis and stress-responsive expression of CCCH zinc finger family genes in Brassica rapa

Boyi Pi (6158561)
Xinghui He (6158564)
Ying Ruan (6158567)
Jyan-Chyun Jang (3179142)
Yong Huang (15745)

December 2018

Detailed information of CCCH gene family in B.rapa. Sequences and information of CCCH genes and prot...

Computational analysis of the Plasmodiophora brassicae genome: mitochondrial sequence description and metabolic pathway database design

Daval, Stéphanie
Belcour, Arnaud
Gazengel, Kévin
Legrand, Ludovic
Gouzy, Jerome
Cottret, Ludovic
Lebreton, Lionel
Aigu, Yoann
Mougel, Christophe
Manzanares-Dauleux, Maria,

December 2019

International audiencePlasmodiophora brassicae is an obligate biotrophic pathogenic protist responsi...

Additional file 5: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Table S3. List of origin genes in B. rapa, B. nigra and amphidiploid genes in B. napus, B. juncea. H...

Additional file 8: Figure S5. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Graphical representation of the 59 SNP haplotypes discovered across 5 pathotypes (The e3 genome was ...

Additional file 7: Table S3. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Gall formation of P. brassicae pathotypes on (A) selected B. napus and B. olereacea hosts and (B) se...

Additional file 5: Figure S4. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

The P. brassicae pathotype 6 shows extensive synteny with pathotype 3 with rare examples of small in...

Additional file 2: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Figure S1. Soft rot symptoms in Brassica rapa subsp. pekinensis (a), Brassica rapa subsp. chinensis ...

Additional file 4: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Abstract

Extracted data

Additional file 4: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Abstract

Extracted data

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