Additional file 2: Table S1. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Additional file 3: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

Rahul Sharma (1458472)
Xiaojuan Xia (3565445)
Liliana Cano (432612)
Edouard Evangelisti (3565460)
Eric Kemen (215150)
Howard Judelson (3565451)
Stan Oome (421709)
Christine Sambles (3565463)
D. van den Hoogen (3565457)
Miloslav Kitner (146626)
JoĂŤl Klein (3565442)
Harold Meijer (3565448)
Otmar Spring (1610911)
Joe Win (6131)
Reinhard Zipper (3373994)
Helge Bode (3450920)
Francine Govers (52155)
Sophien Kamoun (6132)
Sebastian Schornack (142120)
David Studholme (3565454)
Guido Van den Ackerveken (115350)
Marco Thines (298658)

October 2015

Simple sequence repeats within the genome of Plasmophara halstedii . (XLSX 26Â kb

Additional file 1: Table S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Genome comparison of strain DCY84T and closest Paenibacillus strains. Table S2. COGs analysis of dir...

Table_1.DOCX

Hong Li (20183)
Xiaonan Li (340228)
Yuanhu Xuan (4898059)
Jing Jiang (130103)
Yangdou Wei (168452)
Zhongyun Piao (457470)

February 2018

<p>Plasmodiophora brassicae is a soil borne pathogen and the causal agent of clubroot, a devastating...

Additional file 7: Table S3. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Gall formation of P. brassicae pathotypes on (A) selected B. napus and B. olereacea hosts and (B) se...

Additional file 5: Figure S4. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

The P. brassicae pathotype 6 shows extensive synteny with pathotype 3 with rare examples of small in...

Additional file 3: Figure S2. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Intergenic distances between P. brassicae genes. The intergenic distances at the 5â˛ and 3â˛ end o...

Additional file 8: Figure S5. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Graphical representation of the 59 SNP haplotypes discovered across 5 pathotypes (The e3 genome was ...

Additional file 17: Figure S9. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

The terpenoid biosynthesis pathway with enzymes encoded in the P. brassicae genome coloured green. (...

Additional file 2: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S2. Comparative analysis of gene density of genome between Plasmodiophora brassicae ZJ-1 and o...

Additional file 13: Figure S8. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Transient expression of PbPT3Sc00026_A_1.308_1, a benzoic acid/salicylic acid methyltransferase (BSM...

The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Rolfe, S.A.
Strelkov, S.E.
Links, M.G.
Clarke, W.E.
Robinson, S.J.
Djavaheri, M.
Malinowski, R.
Haddadi, P.
Kagale, S.
Parkin, I.A.
Taheri, A.
Borhan, M.H.

March 2016

BACKGROUND: The protist Plasmodiophora brassicae is a soil-borne pathogen of cruciferous species and...

Additional file 2: of Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations

Michael Holtz (5107109)
Sheau-Fang Hwang (537882)
Stephen Strelkov (2409889)

April 2018

Genes containing genetic variants that caused nonsynonymous mutations and distinguished Plasmodiopho...

Additional file 3: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S3. The enrichment of GO terms of Plasmodiophora brassicae-expanded and P. brassicae-specific ...

Additional file 2: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Figure S1. Soft rot symptoms in Brassica rapa subsp. pekinensis (a), Brassica rapa subsp. chinensis ...

Additional file 1: of Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations

Michael Holtz (5107109)
Sheau-Fang Hwang (537882)
Stephen Strelkov (2409889)

April 2018

Clustering of Plasmodiophora brassicae samples based on discriminant analysis of principal component...

Additional file 3: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

Rahul Sharma (1458472)
Xiaojuan Xia (3565445)
Liliana Cano (432612)
Edouard Evangelisti (3565460)
Eric Kemen (215150)
Howard Judelson (3565451)
Stan Oome (421709)
Christine Sambles (3565463)
D. van den Hoogen (3565457)
Miloslav Kitner (146626)
JoĂŤl Klein (3565442)
Harold Meijer (3565448)
Otmar Spring (1610911)
Joe Win (6131)
Reinhard Zipper (3373994)
Helge Bode (3450920)
Francine Govers (52155)
Sophien Kamoun (6132)
Sebastian Schornack (142120)
David Studholme (3565454)
Guido Van den Ackerveken (115350)
Marco Thines (298658)

October 2015

Simple sequence repeats within the genome of Plasmophara halstedii . (XLSX 26Â kb

Additional file 1: Table S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Genome comparison of strain DCY84T and closest Paenibacillus strains. Table S2. COGs analysis of dir...

Table_1.DOCX

Hong Li (20183)
Xiaonan Li (340228)
Yuanhu Xuan (4898059)
Jing Jiang (130103)
Yangdou Wei (168452)
Zhongyun Piao (457470)

February 2018

<p>Plasmodiophora brassicae is a soil borne pathogen and the causal agent of clubroot, a devastating...

Additional file 7: Table S3. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Gall formation of P. brassicae pathotypes on (A) selected B. napus and B. olereacea hosts and (B) se...

Additional file 5: Figure S4. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

The P. brassicae pathotype 6 shows extensive synteny with pathotype 3 with rare examples of small in...

Additional file 3: Figure S2. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Intergenic distances between P. brassicae genes. The intergenic distances at the 5â˛ and 3â˛ end o...

Additional file 8: Figure S5. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Graphical representation of the 59 SNP haplotypes discovered across 5 pathotypes (The e3 genome was ...

Additional file 17: Figure S9. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

The terpenoid biosynthesis pathway with enzymes encoded in the P. brassicae genome coloured green. (...

Additional file 2: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S2. Comparative analysis of gene density of genome between Plasmodiophora brassicae ZJ-1 and o...

Additional file 13: Figure S8. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Stephen Rolfe (125866)
Stephen Strelkov (2409889)
Matthew Links (59540)
Wayne Clarke (3553676)
Stephen Robinson (425911)
Mohammad Djavaheri (3553670)
Robert Malinowski (1368648)
Parham Haddadi (3553673)
Sateesh Kagale (587534)
Isobel Parkin (171781)
Ali Taheri (171770)
M. Borhan (3484328)

March 2016

Transient expression of PbPT3Sc00026_A_1.308_1, a benzoic acid/salicylic acid methyltransferase (BSM...

The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Rolfe, S.A.
Strelkov, S.E.
Links, M.G.
Clarke, W.E.
Robinson, S.J.
Djavaheri, M.
Malinowski, R.
Haddadi, P.
Kagale, S.
Parkin, I.A.
Taheri, A.
Borhan, M.H.

March 2016

BACKGROUND: The protist Plasmodiophora brassicae is a soil-borne pathogen of cruciferous species and...

Additional file 2: of Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations

Michael Holtz (5107109)
Sheau-Fang Hwang (537882)
Stephen Strelkov (2409889)

April 2018

Genes containing genetic variants that caused nonsynonymous mutations and distinguished Plasmodiopho...

Additional file 3: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S3. The enrichment of GO terms of Plasmodiophora brassicae-expanded and P. brassicae-specific ...

Additional file 2: of Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle

Xiaoying Li (147528)
Yali Ma (1444522)
Shuqing Liang (6062324)
Yu Tian (367745)
Sanjun Yin (5811203)
Sisi Xie (6062330)
Hua Xie (49932)

December 2018

Figure S1. Soft rot symptoms in Brassica rapa subsp. pekinensis (a), Brassica rapa subsp. chinensis ...

Additional file 1: of Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations

Michael Holtz (5107109)
Sheau-Fang Hwang (537882)
Stephen Strelkov (2409889)

April 2018

Clustering of Plasmodiophora brassicae samples based on discriminant analysis of principal component...

Additional file 3: of Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

Rahul Sharma (1458472)
Xiaojuan Xia (3565445)
Liliana Cano (432612)
Edouard Evangelisti (3565460)
Eric Kemen (215150)
Howard Judelson (3565451)
Stan Oome (421709)
Christine Sambles (3565463)
D. van den Hoogen (3565457)
Miloslav Kitner (146626)
JoĂŤl Klein (3565442)
Harold Meijer (3565448)
Otmar Spring (1610911)
Joe Win (6131)
Reinhard Zipper (3373994)
Helge Bode (3450920)
Francine Govers (52155)
Sophien Kamoun (6132)
Sebastian Schornack (142120)
David Studholme (3565454)
Guido Van den Ackerveken (115350)
Marco Thines (298658)

October 2015

Simple sequence repeats within the genome of Plasmophara halstedii . (XLSX 26Â kb

Additional file 1: Table S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Genome comparison of strain DCY84T and closest Paenibacillus strains. Table S2. COGs analysis of dir...

Table_1.DOCX

Hong Li (20183)
Xiaonan Li (340228)
Yuanhu Xuan (4898059)
Jing Jiang (130103)
Yangdou Wei (168452)
Zhongyun Piao (457470)

February 2018

<p>Plasmodiophora brassicae is a soil borne pathogen and the causal agent of clubroot, a devastating...

Additional file 2: Table S1. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Abstract

Extracted data

Additional file 2: Table S1. of The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp

Abstract

Extracted data

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