Scree plots for the principal component analyses, Scree plots showing the proportion of variation accounted for by the first ten principal components, calculated for the pairwise distances within a lineage 4 and b lineage 2. (PPTX 142 kb
Table of the 110 genes that were significantly associated with PZA-resistance at gene level, which a...
Strains of the study, including their spoligotyping code (15 digits and 43 digits), PZA resistance, ...
Phylogenetic tree of 322Â M. tuberculosis strains isolated from TBM and PTB patients. The highlighte...
Population diversity within investigated strains, a Principal component 1 (PC1) by principal compone...
Drug-resistance phenotype frequency table, Drug-resistance phenotype frequency table by lineage. ‘To...
Study frequency table, Study frequency table, showing numbers and percentage of strains from each st...
Variant Position Table, Table detailing variants at all positions with at least one non-synonymous v...
Sublineage frequency table, Numbers and percentage by lineage assigned to each sublineage. (PPTX 36 ...
Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...
Non-reference variant frequency histogram, A histogram showing log10(frequency + 1) of non-reference...
Locus Comparison Table, Locus comparison table showing which analyses and in which lineage each loci...
Cross-resistance phenotype table, Cross-Resistance Table upper diagonal shows proportion of samples ...
P-values of association between genes and TB disease phenotype in the discovery and validation sets....
SNP allele frequency spectrum. A large number of rare variants are observed. Peaks with higher allel...
Table S3. Ninety three SNPs exhibited significantly different percentages (adjusted p-value<â0.01)...
Table of the 110 genes that were significantly associated with PZA-resistance at gene level, which a...
Strains of the study, including their spoligotyping code (15 digits and 43 digits), PZA resistance, ...
Phylogenetic tree of 322Â M. tuberculosis strains isolated from TBM and PTB patients. The highlighte...
Population diversity within investigated strains, a Principal component 1 (PC1) by principal compone...
Drug-resistance phenotype frequency table, Drug-resistance phenotype frequency table by lineage. ‘To...
Study frequency table, Study frequency table, showing numbers and percentage of strains from each st...
Variant Position Table, Table detailing variants at all positions with at least one non-synonymous v...
Sublineage frequency table, Numbers and percentage by lineage assigned to each sublineage. (PPTX 36 ...
Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...
Non-reference variant frequency histogram, A histogram showing log10(frequency + 1) of non-reference...
Locus Comparison Table, Locus comparison table showing which analyses and in which lineage each loci...
Cross-resistance phenotype table, Cross-Resistance Table upper diagonal shows proportion of samples ...
P-values of association between genes and TB disease phenotype in the discovery and validation sets....
SNP allele frequency spectrum. A large number of rare variants are observed. Peaks with higher allel...
Table S3. Ninety three SNPs exhibited significantly different percentages (adjusted p-value<â0.01)...
Table of the 110 genes that were significantly associated with PZA-resistance at gene level, which a...
Strains of the study, including their spoligotyping code (15 digits and 43 digits), PZA resistance, ...
Phylogenetic tree of 322Â M. tuberculosis strains isolated from TBM and PTB patients. The highlighte...