Variant Position Table, Table detailing variants at all positions with at least one non-synonymous variant found to be significantly associated with a phenotype in any of the variant-based analyses. (PPTX 52 kb
P-values of association between genes and TB disease phenotype in the discovery and validation sets....
Complete results of the analysis by gene, showing for each gene the number of resistant strains with...
Figure S1. The profile of 1110 isolates. (a) The distribution of isolates in three studies. (b) The ...
Drug-resistance phenotype frequency table, Drug-resistance phenotype frequency table by lineage. ‘To...
Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...
Study frequency table, Study frequency table, showing numbers and percentage of strains from each st...
Locus Comparison Table, Locus comparison table showing which analyses and in which lineage each loci...
Sublineage frequency table, Numbers and percentage by lineage assigned to each sublineage. (PPTX 36 ...
Scree plots for the principal component analyses, Scree plots showing the proportion of variation ac...
Cross-resistance phenotype table, Cross-Resistance Table upper diagonal shows proportion of samples ...
Non-reference variant frequency histogram, A histogram showing log10(frequency + 1) of non-reference...
Population diversity within investigated strains, a Principal component 1 (PC1) by principal compone...
SNP allele frequency spectrum. A large number of rare variants are observed. Peaks with higher allel...
Table of the 110 genes that were significantly associated with PZA-resistance at gene level, which a...
Strains of the study, including their spoligotyping code (15 digits and 43 digits), PZA resistance, ...
P-values of association between genes and TB disease phenotype in the discovery and validation sets....
Complete results of the analysis by gene, showing for each gene the number of resistant strains with...
Figure S1. The profile of 1110 isolates. (a) The distribution of isolates in three studies. (b) The ...
Drug-resistance phenotype frequency table, Drug-resistance phenotype frequency table by lineage. ‘To...
Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference, with...
Study frequency table, Study frequency table, showing numbers and percentage of strains from each st...
Locus Comparison Table, Locus comparison table showing which analyses and in which lineage each loci...
Sublineage frequency table, Numbers and percentage by lineage assigned to each sublineage. (PPTX 36 ...
Scree plots for the principal component analyses, Scree plots showing the proportion of variation ac...
Cross-resistance phenotype table, Cross-Resistance Table upper diagonal shows proportion of samples ...
Non-reference variant frequency histogram, A histogram showing log10(frequency + 1) of non-reference...
Population diversity within investigated strains, a Principal component 1 (PC1) by principal compone...
SNP allele frequency spectrum. A large number of rare variants are observed. Peaks with higher allel...
Table of the 110 genes that were significantly associated with PZA-resistance at gene level, which a...
Strains of the study, including their spoligotyping code (15 digits and 43 digits), PZA resistance, ...
P-values of association between genes and TB disease phenotype in the discovery and validation sets....
Complete results of the analysis by gene, showing for each gene the number of resistant strains with...
Figure S1. The profile of 1110 isolates. (a) The distribution of isolates in three studies. (b) The ...