Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

Open link

Publication date

April 2019

DOI

10.6084/m9.figshare.7968170.v1

Abstract

Table S2. Graphical illustration of genotypes showing recombination between Alt and flanking markers. (PDF 38 kb

Extracted data

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Data Protection

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

Open link

Publication date

April 2019

DOI

10.6084/m9.figshare.7968170.v1

Abstract

Table S2. Graphical illustration of genotypes showing recombination between Alt and flanking markers. (PDF 38 kb

Extracted data

Sheng Fan (3093600)
Jue Wang (58890)
Chao Lei (3093603)
Cai Gao (422209)
Yang Yang (45629)
Youmei Li (4541452)
Na An (299087)
Dong Zhang (73558)
Mingyu Han (117419)

August 2018

Table S3. Table S3. Detailed annotations of MdHMs according to the Gene Ontology (GO) terms (XLS 354...

Additional file 3: of Mapping QTLs for water-use efficiency reveals the potential candidate genes involved in regulating the trait in apple under drought stress

Haibo Wang (130324)
Shuang Zhao (484057)
Ke Mao (674027)
Qinglong Dong (5449094)
Bowen Liang (5339090)
Chao Li (145513)
Zhiwei Wei (5339093)
Mingjun Li (178925)
Fengwang Ma (235563)

June 2018

Table S2. List of genetic and physical map location of 10,172 SNP markers and their genotyping data ...

Additional file 2: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Additional file 1: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S1. Pedigree of susceptible apple accessions used in this study. (PDF 50 kb

Additional file 5: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S3. Amino acid sequence alignment of predicted candidate genes of Alt, A8, a2, and G14. (PDF ...

Additional file 7: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Table S3. Presence of 12-bp insertion among founders and old cultivars. (PDF 50 kb

Additional file 6: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S4. Amino acid sequence alignment of predicted candidate genes of Alt, A10, a4, and G16. (PDF...

Additional file 4: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S2. Pairwise alignment of A6, a predicted ORF in the Alt region and XP_009379454.1, the gene ...

Additional file 2: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Table S1. Details of the bisulfite sequencing libraries generated in the study. Table S2. Effective ...

Additional file 1: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Figure S1. Evaluation of the relationships among five apple cultivars. Figure S2. Summary of sequenc...

Identification of candidate genes responsible for the susceptibility of apple (Malus × domestica Borkh.) to Alternaria blotch

Shigeki Moriya
Shingo Terakami
Kazuma Okada
Taku Shimizu
Yoshihiko Adachi
Yuichi Katayose
Hiroko Fujisawa
Jianzhon Wu
Hiroyuki Kanamori
Toshiya Yamamoto
Kazuyuki Abe

April 2019

Abstract Background The mechanism underlying the interaction between host plant and host-selective t...

Additional file 1: of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Rui Sun (177521)
Yuansheng Chang (3548573)
Fengqiu Yang (3548567)
Yi Wang (32470)
Hui Li (32376)
Yongbo Zhao (3548570)
Dongmei Chen (124974)
Ting Wu (106368)
Xinzhong Zhang (319193)
Zhenhai Han (319194)

October 2015

Table S1. Primer sequences for candidate genes analyzed by real-time PCR. Table S2. Numbers of linka...

Additional file 2 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 2: Supplementary Table 1. Mean and standard error for European canker phenotypes. Su...

Additional file 3: of Identification and characterization of histone modification gene family reveal their critical responses to flower induction in apple

Sheng Fan (3093600)
Jue Wang (58890)
Chao Lei (3093603)
Cai Gao (422209)
Yang Yang (45629)
Youmei Li (4541452)
Na An (299087)
Dong Zhang (73558)
Mingyu Han (117419)

August 2018

Table S3. Table S3. Detailed annotations of MdHMs according to the Gene Ontology (GO) terms (XLS 354...

Additional file 3: of Mapping QTLs for water-use efficiency reveals the potential candidate genes involved in regulating the trait in apple under drought stress

Haibo Wang (130324)
Shuang Zhao (484057)
Ke Mao (674027)
Qinglong Dong (5449094)
Bowen Liang (5339090)
Chao Li (145513)
Zhiwei Wei (5339093)
Mingjun Li (178925)
Fengwang Ma (235563)

June 2018

Table S2. List of genetic and physical map location of 10,172 SNP markers and their genotyping data ...

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Additional file 1: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S1. Pedigree of susceptible apple accessions used in this study. (PDF 50 kb

Additional file 5: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S3. Amino acid sequence alignment of predicted candidate genes of Alt, A8, a2, and G14. (PDF ...

Additional file 7: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Table S3. Presence of 12-bp insertion among founders and old cultivars. (PDF 50 kb

Additional file 6: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S4. Amino acid sequence alignment of predicted candidate genes of Alt, A10, a4, and G16. (PDF...

Additional file 4: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S2. Pairwise alignment of A6, a predicted ORF in the Alt region and XP_009379454.1, the gene ...

Additional file 2: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Table S1. Details of the bisulfite sequencing libraries generated in the study. Table S2. Effective ...

Additional file 1: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Figure S1. Evaluation of the relationships among five apple cultivars. Figure S2. Summary of sequenc...

Identification of candidate genes responsible for the susceptibility of apple (Malus × domestica Borkh.) to Alternaria blotch

Shigeki Moriya
Shingo Terakami
Kazuma Okada
Taku Shimizu
Yoshihiko Adachi
Yuichi Katayose
Hiroko Fujisawa
Jianzhon Wu
Hiroyuki Kanamori
Toshiya Yamamoto
Kazuyuki Abe

April 2019

Abstract Background The mechanism underlying the interaction between host plant and host-selective t...

Additional file 1: of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Rui Sun (177521)
Yuansheng Chang (3548573)
Fengqiu Yang (3548567)
Yi Wang (32470)
Hui Li (32376)
Yongbo Zhao (3548570)
Dongmei Chen (124974)
Ting Wu (106368)
Xinzhong Zhang (319193)
Zhenhai Han (319194)

October 2015

Table S1. Primer sequences for candidate genes analyzed by real-time PCR. Table S2. Numbers of linka...

Additional file 2 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 2: Supplementary Table 1. Mean and standard error for European canker phenotypes. Su...

Additional file 3: of Identification and characterization of histone modification gene family reveal their critical responses to flower induction in apple

Sheng Fan (3093600)
Jue Wang (58890)
Chao Lei (3093603)
Cai Gao (422209)
Yang Yang (45629)
Youmei Li (4541452)
Na An (299087)
Dong Zhang (73558)
Mingyu Han (117419)

August 2018

Table S3. Table S3. Detailed annotations of MdHMs according to the Gene Ontology (GO) terms (XLS 354...

Additional file 3: of Mapping QTLs for water-use efficiency reveals the potential candidate genes involved in regulating the trait in apple under drought stress

Haibo Wang (130324)
Shuang Zhao (484057)
Ke Mao (674027)
Qinglong Dong (5449094)
Bowen Liang (5339090)
Chao Li (145513)
Zhiwei Wei (5339093)
Mingjun Li (178925)
Fengwang Ma (235563)

June 2018

Table S2. List of genetic and physical map location of 10,172 SNP markers and their genotyping data ...

Yufeng Zhu (3406496)
Yanfei Yin (3406499)
Keqiang Yang (3406490)
Jihong Li (45207)
Yalin Sang (740047)
Long Huang (138651)
Shu Fan (3406493)

August 2015

Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 in...

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Abstract

Extracted data

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Abstract

Extracted data

Related items

Related items

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Abstract

Extracted data

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Abstract

Extracted data

Related items

Related items

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch