Additional file 1: of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Additional file 1: of High-density SNP linkage map construction and QTL mapping for flavonoid-related traits in a tea plant (Camellia sinensis) using 2b-RAD sequencing

Li-Yi Xu (6113081)
Li-Yuan Wang (489823)
Kang Wei (489824)
Li-Qiang Tan (489822)
Jing-Jing Su (2248540)
Hao Cheng (103394)

December 2018

Table S1. The statistics of sequencing results (the adaptors consisted of recognition base and overh...

Additional file 5: Table S4. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Mapping data and polymorphism in the 48 ‘Baccara’ x ‘PI180693’ RILs of a set of 64,263 SNP markers m...

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Table S2. Graphical illustration of genotypes showing recombination between Alt and flanking markers...

Additional file 6: Table S4. of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Rui Sun (177521)
Yuansheng Chang (3548573)
Fengqiu Yang (3548567)
Yi Wang (32470)
Hui Li (32376)
Yongbo Zhao (3548570)
Dongmei Chen (124974)
Ting Wu (106368)
Xinzhong Zhang (319193)
Zhenhai Han (319194)

October 2015

Candidate genes searched from the regions of five significant QTLs (interval < 5 cM). These five QTL...

Additional file 4: Figure S2. of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Rui Sun (177521)
Yuansheng Chang (3548573)
Fengqiu Yang (3548567)
Yi Wang (32470)
Hui Li (32376)
Yongbo Zhao (3548570)
Dongmei Chen (124974)
Ting Wu (106368)
Xinzhong Zhang (319193)
Zhenhai Han (319194)

October 2015

Frequency distribution diagrams of fruit quality traits in an F1 population derived from ‘Jonathan’ ...

Additional file 2: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Table S1. Details of the bisulfite sequencing libraries generated in the study. Table S2. Effective ...

Additional file 1: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Figure S1. Evaluation of the relationships among five apple cultivars. Figure S2. Summary of sequenc...

Additional file 3: of Mapping QTLs for water-use efficiency reveals the potential candidate genes involved in regulating the trait in apple under drought stress

Haibo Wang (130324)
Shuang Zhao (484057)
Ke Mao (674027)
Qinglong Dong (5449094)
Bowen Liang (5339090)
Chao Li (145513)
Zhiwei Wei (5339093)
Mingjun Li (178925)
Fengwang Ma (235563)

June 2018

Table S2. List of genetic and physical map location of 10,172 SNP markers and their genotyping data ...

Additional file 1: Table S1. of Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing

Ibrahim Celik (3613994)
Nergiz Gurbuz (3614006)
Ali Uncu (3614000)
Anne Frary (3614003)
Sami Doganlar (3613997)

January 2017

TASSEL software parameters used for SNP calling and filtering. Table S2. Types of substitutions repr...

Additional file 2: of An SNP-based saturated genetic map and QTL analysis of fruit-related traits in Zucchini using Genotyping-by-sequencing

Javier Montero-Pau (348951)
José Blanca (35582)
Cristina Esteras (3432293)
Eva Martínez-Pérez (3665032)
Pedro Gómez (35587)
Antonio Monforte (3432290)
Joaquín Cañizares (123501)
Belén Picó (35585)

January 2017

Average percentage of genome covered with the GBS reads with a read depth from > 1 to > 20. (PPTX 71...

Additional file 1: of Genome-wide identification of SERK genes in apple and analyses of their role in stress responses and growth

Liwei Zheng (296260)
Juanjuan Ma (459193)
Jiangping Mao (3503255)
Sheng Fan (3093600)
Dong Zhang (73558)
Caiping Zhao (3093594)
Na An (299087)
Mingyu Han (117419)

January 2019

Table S1. Primers and their sequences used for qRT-PCR analyses. a Internal control. Table S2. Best ...

Additional file 1: of Transcriptome profiling of anthocyanin biosynthesis in the peel of ‘Granny Smith’ apples (Malus domestica) after bag removal

Changqing Ma (73409)
Bowen Liang (5339090)
Bo Chang (167275)
Jiuying Yan (5343236)
Li Liu (75607)
Ying Wang (11406)
Yazhou Yang (3278889)
Zhengyang Zhao (1512127)

May 2019

Table S1. Statistics related to the quality and output of RNA-seq libraries. Table S2. Throughput an...

Additional file 1: Table S1. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Statistics on raw, cleaned and processing of sequencing data across the eight parental lines and 48 ...

Additional file 8: of QTL mapping of melon fruit quality traits using a high-density GBS-based genetic map

L. Pereira (6039596)
V. Ruggieri (6039602)
S. Pérez (6039608)
K. Alexiou (6039611)
M. Fernández (6039620)
T. Jahrmann (6039623)
M. Pujol (6039626)
J. Garcia-Mas (6039632)

December 2018

Table S3. (a) Candidate genes for fruit morphology in the melon genome annotation v4.0. (b). Candida...

Additional file 3: of QTL mapping of melon fruit quality traits using a high-density GBS-based genetic map

L. Pereira (6039596)
V. Ruggieri (6039602)
S. Pérez (6039608)
K. Alexiou (6039611)
M. Fernández (6039620)
T. Jahrmann (6039623)
M. Pujol (6039626)
J. Garcia-Mas (6039632)

December 2018

Table S1. Markers obtained with GBS. (A) All markers; (B) Selected markers; (C) All bins; (D) Select...

Additional file 1: of High-density SNP linkage map construction and QTL mapping for flavonoid-related traits in a tea plant (Camellia sinensis) using 2b-RAD sequencing

Li-Yi Xu (6113081)
Li-Yuan Wang (489823)
Kang Wei (489824)
Li-Qiang Tan (489822)
Jing-Jing Su (2248540)
Hao Cheng (103394)

December 2018

Table S1. The statistics of sequencing results (the adaptors consisted of recognition base and overh...

Additional file 5: Table S4. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Mapping data and polymorphism in the 48 ‘Baccara’ x ‘PI180693’ RILs of a set of 64,263 SNP markers m...

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Table S2. Graphical illustration of genotypes showing recombination between Alt and flanking markers...

Additional file 6: Table S4. of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Rui Sun (177521)
Yuansheng Chang (3548573)
Fengqiu Yang (3548567)
Yi Wang (32470)
Hui Li (32376)
Yongbo Zhao (3548570)
Dongmei Chen (124974)
Ting Wu (106368)
Xinzhong Zhang (319193)
Zhenhai Han (319194)

October 2015

Candidate genes searched from the regions of five significant QTLs (interval < 5 cM). These five QTL...

Additional file 4: Figure S2. of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Rui Sun (177521)
Yuansheng Chang (3548573)
Fengqiu Yang (3548567)
Yi Wang (32470)
Hui Li (32376)
Yongbo Zhao (3548570)
Dongmei Chen (124974)
Ting Wu (106368)
Xinzhong Zhang (319193)
Zhenhai Han (319194)

October 2015

Frequency distribution diagrams of fruit quality traits in an F1 population derived from ‘Jonathan’ ...

Additional file 2: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Table S1. Details of the bisulfite sequencing libraries generated in the study. Table S2. Effective ...

Additional file 1: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Figure S1. Evaluation of the relationships among five apple cultivars. Figure S2. Summary of sequenc...

Additional file 3: of Mapping QTLs for water-use efficiency reveals the potential candidate genes involved in regulating the trait in apple under drought stress

Haibo Wang (130324)
Shuang Zhao (484057)
Ke Mao (674027)
Qinglong Dong (5449094)
Bowen Liang (5339090)
Chao Li (145513)
Zhiwei Wei (5339093)
Mingjun Li (178925)
Fengwang Ma (235563)

June 2018

Table S2. List of genetic and physical map location of 10,172 SNP markers and their genotyping data ...

Additional file 1: Table S1. of Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing

Ibrahim Celik (3613994)
Nergiz Gurbuz (3614006)
Ali Uncu (3614000)
Anne Frary (3614003)
Sami Doganlar (3613997)

January 2017

TASSEL software parameters used for SNP calling and filtering. Table S2. Types of substitutions repr...

Additional file 2: of An SNP-based saturated genetic map and QTL analysis of fruit-related traits in Zucchini using Genotyping-by-sequencing

Javier Montero-Pau (348951)
José Blanca (35582)
Cristina Esteras (3432293)
Eva Martínez-Pérez (3665032)
Pedro Gómez (35587)
Antonio Monforte (3432290)
Joaquín Cañizares (123501)
Belén Picó (35585)

January 2017

Average percentage of genome covered with the GBS reads with a read depth from > 1 to > 20. (PPTX 71...

Additional file 1: of Genome-wide identification of SERK genes in apple and analyses of their role in stress responses and growth

Liwei Zheng (296260)
Juanjuan Ma (459193)
Jiangping Mao (3503255)
Sheng Fan (3093600)
Dong Zhang (73558)
Caiping Zhao (3093594)
Na An (299087)
Mingyu Han (117419)

January 2019

Table S1. Primers and their sequences used for qRT-PCR analyses. a Internal control. Table S2. Best ...

Additional file 1: of Transcriptome profiling of anthocyanin biosynthesis in the peel of ‘Granny Smith’ apples (Malus domestica) after bag removal

Changqing Ma (73409)
Bowen Liang (5339090)
Bo Chang (167275)
Jiuying Yan (5343236)
Li Liu (75607)
Ying Wang (11406)
Yazhou Yang (3278889)
Zhengyang Zhao (1512127)

May 2019

Table S1. Statistics related to the quality and output of RNA-seq libraries. Table S2. Throughput an...

Additional file 1: Table S1. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Statistics on raw, cleaned and processing of sequencing data across the eight parental lines and 48 ...

Additional file 8: of QTL mapping of melon fruit quality traits using a high-density GBS-based genetic map

L. Pereira (6039596)
V. Ruggieri (6039602)
S. Pérez (6039608)
K. Alexiou (6039611)
M. Fernández (6039620)
T. Jahrmann (6039623)
M. Pujol (6039626)
J. Garcia-Mas (6039632)

December 2018

Table S3. (a) Candidate genes for fruit morphology in the melon genome annotation v4.0. (b). Candida...

Additional file 3: of QTL mapping of melon fruit quality traits using a high-density GBS-based genetic map

L. Pereira (6039596)
V. Ruggieri (6039602)
S. Pérez (6039608)
K. Alexiou (6039611)
M. Fernández (6039620)
T. Jahrmann (6039623)
M. Pujol (6039626)
J. Garcia-Mas (6039632)

December 2018

Table S1. Markers obtained with GBS. (A) All markers; (B) Selected markers; (C) All bins; (D) Select...

Additional file 1: of High-density SNP linkage map construction and QTL mapping for flavonoid-related traits in a tea plant (Camellia sinensis) using 2b-RAD sequencing

Li-Yi Xu (6113081)
Li-Yuan Wang (489823)
Kang Wei (489824)
Li-Qiang Tan (489822)
Jing-Jing Su (2248540)
Hao Cheng (103394)

December 2018

Table S1. The statistics of sequencing results (the adaptors consisted of recognition base and overh...

Additional file 5: Table S4. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet (3472874)
Susete Alves Carvalho (3453005)
Matthieu Falque (76113)
Pierre Peterlongo (3282846)
Emeline Lhuillier (391781)
Olivier Bouchez (104385)
Clément Lavaud (3472877)
Marie-Laure Pilet-Nayel (3472871)
Nathalie Rivière (3472880)
Alain Baranger (3472868)

February 2016

Mapping data and polymorphism in the 48 ‘Baccara’ x ‘PI180693’ RILs of a set of 64,263 SNP markers m...

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Table S2. Graphical illustration of genotypes showing recombination between Alt and flanking markers...

Additional file 1: of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Abstract

Extracted data

Additional file 1: of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Abstract

Extracted data

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