Additional file 1: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Additional file 1: of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Rui Sun (177521)
Yuansheng Chang (3548573)
Fengqiu Yang (3548567)
Yi Wang (32470)
Hui Li (32376)
Yongbo Zhao (3548570)
Dongmei Chen (124974)
Ting Wu (106368)
Xinzhong Zhang (319193)
Zhenhai Han (319194)

October 2015

Table S1. Primer sequences for candidate genes analyzed by real-time PCR. Table S2. Numbers of linka...

Additional file 1 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 1: Supplementary Fig. 1A-1H. Phenotypic distributions for each European canker pheno...

Additional file 2: of Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation

Monika Michalecka (4783554)
Sylwester Masny (4783557)
Thibault Leroy (3276063)
Joanna Puławska (4589860)

January 2018

Fig. S2. Ancestral proportion of Venturia inaequalis haplotypes for the K = 7 clusters inferred with...

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Table S2. Graphical illustration of genotypes showing recombination between Alt and flanking markers...

Additional file 7: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Table S3. Presence of 12-bp insertion among founders and old cultivars. (PDF 50 kb

Additional file 5: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S3. Amino acid sequence alignment of predicted candidate genes of Alt, A8, a2, and G14. (PDF ...

Additional file 6: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S4. Amino acid sequence alignment of predicted candidate genes of Alt, A10, a4, and G16. (PDF...

Additional file 4: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S2. Pairwise alignment of A6, a predicted ORF in the Alt region and XP_009379454.1, the gene ...

Identification of candidate genes responsible for the susceptibility of apple (Malus × domestica Borkh.) to Alternaria blotch

Shigeki Moriya
Shingo Terakami
Kazuma Okada
Taku Shimizu
Yoshihiko Adachi
Yuichi Katayose
Hiroko Fujisawa
Jianzhon Wu
Hiroyuki Kanamori
Toshiya Yamamoto
Kazuyuki Abe

April 2019

Abstract Background The mechanism underlying the interaction between host plant and host-selective t...

Additional file 5: of The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

James Boocock (804520)
David ChagnĂŠ (3556253)
Tony Merriman (430987)
Michael Black (246211)

October 2015

List of resistance (R) gene models located within copy-number variable regions (CNVRs) in the apple ...

Additional file 1: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Figure S1. Evaluation of the relationships among five apple cultivars. Figure S2. Summary of sequenc...

Additional file 2: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Table S1. Details of the bisulfite sequencing libraries generated in the study. Table S2. Effective ...

Additional file 4: of The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

James Boocock (804520)
David ChagnĂŠ (3556253)
Tony Merriman (430987)
Michael Black (246211)

October 2015

List of all gene models found within copy-number variable regions (CNVRs) in the apple genome. (XLSX...

Additional file 2 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 2: Supplementary Table 1. Mean and standard error for European canker phenotypes. Su...

Additional file 7: Table S6. of Comparative transcriptome analysis of a lowly virulent strain of Erwinia amylovora in shoots of two apple cultivars – susceptible and resistant to fire blight

Joanna Puławska (4589860)
Monika Kałużna (4589863)
Wojciech Warabieda (4589854)
Artur Mikiciński (4589857)

November 2017

Erwinia amylovora 650 genes up-regulated in Free Redstar (FR-24 h) in comparison to Idared (I-24 h) ...

Additional file 1: of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Rui Sun (177521)
Yuansheng Chang (3548573)
Fengqiu Yang (3548567)
Yi Wang (32470)
Hui Li (32376)
Yongbo Zhao (3548570)
Dongmei Chen (124974)
Ting Wu (106368)
Xinzhong Zhang (319193)
Zhenhai Han (319194)

October 2015

Table S1. Primer sequences for candidate genes analyzed by real-time PCR. Table S2. Numbers of linka...

Additional file 1 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 1: Supplementary Fig. 1A-1H. Phenotypic distributions for each European canker pheno...

Additional file 2: of Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation

Monika Michalecka (4783554)
Sylwester Masny (4783557)
Thibault Leroy (3276063)
Joanna Puławska (4589860)

January 2018

Fig. S2. Ancestral proportion of Venturia inaequalis haplotypes for the K = 7 clusters inferred with...

Additional file 3: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Table S2. Graphical illustration of genotypes showing recombination between Alt and flanking markers...

Additional file 7: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Table S3. Presence of 12-bp insertion among founders and old cultivars. (PDF 50 kb

Additional file 5: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S3. Amino acid sequence alignment of predicted candidate genes of Alt, A8, a2, and G14. (PDF ...

Additional file 6: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S4. Amino acid sequence alignment of predicted candidate genes of Alt, A10, a4, and G16. (PDF...

Additional file 4: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Shigeki Moriya (6566534)
Shingo Terakami (6566537)
Kazuma Okada (2629606)
Taku Shimizu (52126)
Yoshihiko Adachi (6566540)
Yuichi Katayose (3408902)
Hiroko Fujisawa (465179)
Jianzhon Wu (6566543)
Hiroyuki Kanamori (82111)
Toshiya Yamamoto (2817202)
Kazuyuki Abe (6566546)

April 2019

Figure S2. Pairwise alignment of A6, a predicted ORF in the Alt region and XP_009379454.1, the gene ...

Identification of candidate genes responsible for the susceptibility of apple (Malus × domestica Borkh.) to Alternaria blotch

Shigeki Moriya
Shingo Terakami
Kazuma Okada
Taku Shimizu
Yoshihiko Adachi
Yuichi Katayose
Hiroko Fujisawa
Jianzhon Wu
Hiroyuki Kanamori
Toshiya Yamamoto
Kazuyuki Abe

April 2019

Abstract Background The mechanism underlying the interaction between host plant and host-selective t...

Additional file 5: of The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

James Boocock (804520)
David ChagnĂŠ (3556253)
Tony Merriman (430987)
Michael Black (246211)

October 2015

List of resistance (R) gene models located within copy-number variable regions (CNVRs) in the apple ...

Additional file 1: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Figure S1. Evaluation of the relationships among five apple cultivars. Figure S2. Summary of sequenc...

Additional file 2: of Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype

Sheng-Hui Jiang (6314357)
Qing-Guo Sun (6314363)
Min Chen (147733)
Nan Wang (21935)
Hai-Feng Xu (6314372)
Hong-Cheng Fang (6314375)
Yi-Cheng Wang (2162197)
Zong-Ying Zhang (4020716)
Xue-Sen Chen (6314378)

February 2019

Table S1. Details of the bisulfite sequencing libraries generated in the study. Table S2. Effective ...

Additional file 4: of The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

James Boocock (804520)
David ChagnĂŠ (3556253)
Tony Merriman (430987)
Michael Black (246211)

October 2015

List of all gene models found within copy-number variable regions (CNVRs) in the apple genome. (XLSX...

Additional file 2 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 2: Supplementary Table 1. Mean and standard error for European canker phenotypes. Su...

Additional file 7: Table S6. of Comparative transcriptome analysis of a lowly virulent strain of Erwinia amylovora in shoots of two apple cultivars – susceptible and resistant to fire blight

Joanna Puławska (4589860)
Monika Kałużna (4589863)
Wojciech Warabieda (4589854)
Artur Mikiciński (4589857)

November 2017

Erwinia amylovora 650 genes up-regulated in Free Redstar (FR-24 h) in comparison to Idared (I-24 h) ...

Additional file 1: of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Rui Sun (177521)
Yuansheng Chang (3548573)
Fengqiu Yang (3548567)
Yi Wang (32470)
Hui Li (32376)
Yongbo Zhao (3548570)
Dongmei Chen (124974)
Ting Wu (106368)
Xinzhong Zhang (319193)
Zhenhai Han (319194)

October 2015

Table S1. Primer sequences for candidate genes analyzed by real-time PCR. Table S2. Numbers of linka...

Additional file 1 of Identification of novel genetic regions associated with resistance to European canker in apple

Amanda Karlström (13841437)
Antonio Gómez-Cortecero (13841440)
Charlotte F. Nellist (13841443)
Matthew Ordidge (13841446)
Jim M. Dunwell (13841449)
Richard J. Harrison (13841452)

September 2022

Additional file 1: Supplementary Fig. 1A-1H. Phenotypic distributions for each European canker pheno...

Additional file 2: of Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation

Monika Michalecka (4783554)
Sylwester Masny (4783557)
Thibault Leroy (3276063)
Joanna Puławska (4589860)

January 2018

Fig. S2. Ancestral proportion of Venturia inaequalis haplotypes for the K = 7 clusters inferred with...

Additional file 1: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Abstract

Extracted data

Additional file 1: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Abstract

Extracted data

Related items

Related items

Additional file 1: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Abstract

Extracted data

Additional file 1: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Abstract

Extracted data

Related items

Related items

Additional file 1: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch

Additional file 1: of Identification of candidate genes responsible for the susceptibility of apple (Malus Ă domestica Borkh.) to Alternaria blotch