Additional file 5: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Additional file 1: Table S1. of A comprehensive meta-analysis of common genetic variants in autism spectrum conditions

Varun Warrier (560166)
Vivienne Chee (3400478)
Paula Smith (10538)
Bhismadev Chakrabarti (127590)
Simon Baron-Cohen (111352)

August 2015

Studies included and study characteristics and Table S2. Studies Excluded; Figures S1âS20. Forest ...

Additional file 1: of Brain hyperserotonemia causes autism-relevant social deficits in mice

Miho Tanaka (2309254)
Atsushi Sato (275996)
Shinya Kasai (238826)
Yoko Hagino (238822)
Hiroko Kotajima-Murakami (3335583)
Hirofumi Kashii (6010955)
Yukio Takamatsu (349184)
Yasumasa Nishito (395771)
Masumi Inagaki (364155)
Masashi Mizuguchi (276290)
F. Hall (5816357)
George Uhl (5816369)
Dennis Murphy (1779949)
Ichiro Sora (259637)
Kazutaka Ikeda (142226)

November 2018

Protocol on behavioral tests and lists of gene expression in detail. (DOCX 79 kb

Additional file 1: of Co-expression of long non-coding RNAs and autism risk genes in the developing human brain

Steven Cogill (6088238)
Anand Srivastava (230731)
Mary Yang (4724700)
Liangjiang Wang (19391)

December 2018

List of lncRNAs with their module assignment and association with ASD risk genes in the co-expressio...

Additional file 4: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

gProfileR biological process overrepresentation results of the genes contained in the significant in...

Additional file 3: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Full ASD GSEA pre-ranked enrichment results for different molecular signatures (C2, H, GO_BP, GO_CC,...

Additional file 1: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Table S1. Datasets included in our study. Table S2. Age, gender and pmi distributions between cases ...

Additional file 5: of Integrated genome-wide Alu methylation and transcriptome profiling analyses reveal novel epigenetic regulatory networks associated with autism spectrum disorder

Thanit Saeliw (5106851)
Chayanin Tangsuwansri (5106863)
Surangrat Thongkorn (5106860)
Weerasak Chonchaiya (5106857)
Kanya Suphapeetiporn (580999)
Apiwat Mutirangura (16235)
Tewin Tencomnao (2864969)
Valerie Hu (5106854)
Tewarit Sarachana (229926)

April 2018

Correlation analysis between AluS methylation and expression level of ASD subgroup L. (PDF 329Â kb

Additional file 5 of An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping

Gayathri Thillaiyampalam (4711104)
Fabio Liberante (4711101)
Liam Murray (584595)
Chris Cardwell (4676743)
Ken Mills (204775)
Shu-Dong Zhang (231229)

December 2017

Tumor vs Adjacent differentially expressed genes. The full list of 164 significant genes selected fr...

Additional file 8 of An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping

Gayathri Thillaiyampalam (4711104)
Fabio Liberante (4711101)
Liam Murray (584595)
Chris Cardwell (4676743)
Ken Mills (204775)
Shu-Dong Zhang (231229)

December 2017

Tumor vs Normal 5 sub-gene signatures. The 5 non-joint 83-gene signatures are included, each consist...

Additional file 6 of An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping

Gayathri Thillaiyampalam (4711104)
Fabio Liberante (4711101)
Liam Murray (584595)
Chris Cardwell (4676743)
Ken Mills (204775)
Shu-Dong Zhang (231229)

December 2017

Tumor vs Normal 415-gene signature KEGG pathways. Full results of the KEGG human pathway enrichment ...

Additional file 7: of Separation of breast cancer and organ microenvironment transcriptomes in metastases

Mohammad Alzubi (6431630)
Tia Turner (6431633)
Amy Olex (6431636)
Sahib Sohal (6431639)
Nicholas Tobin (4848271)
Susana Recio (6431642)
Jonas Bergh (23551)
Thomas Hatschek (22685)
Joel Parker (17174)
Carol Sartorius (6431645)
Charles Perou (3530138)
Mikhail Dozmorov (4630)
J. Harrell (6413768)

March 2019

Genes upregulated during liver metastasis; cancer and organ-specific changes. DESeq2 was used to ide...

Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Forés-Martos, Jaume
Catala-Lopez, Ferran
Sánchez-Valle, Jon
Ibáñez, Kristina
Tejero Franco, Hector
Palma-Gudiel, Helena
Climent, Joan
Pancaldi, Vera
Fañanás, Lourdes
Arango, Celso
Parellada, Mara
Baudot, Anaïs
Vogt, Daniel
Rubenstein, John L
Valencia, Alfonso
Tabarés-Seisdedos, Rafael

January 2019

Background: Epidemiological and clinical evidence points to cancer as a comorbidity in people with a...

Additional file 6: of Strong correlation of downregulated genes related to synaptic transmission and mitochondria in post-mortem autism cerebral cortex

Matthew Schwede (388038)
Shailender Nagpal (5331614)
Michael Gandal (5331605)
Neelroop Parikshak (5331608)
Karoly Mirnics (1399432)
Daniel Geschwind (406536)
Eric Morrow (5331611)

June 2018

Figure S2. Heatmaps of mitochondrial genes in the Chow et al. and Garbett et al. microarray datasets...

Additional file 5: of Strong correlation of downregulated genes related to synaptic transmission and mitochondria in post-mortem autism cerebral cortex

Matthew Schwede (388038)
Shailender Nagpal (5331614)
Michael Gandal (5331605)
Neelroop Parikshak (5331608)
Karoly Mirnics (1399432)
Daniel Geschwind (406536)
Eric Morrow (5331611)

June 2018

Table S4. Synapse pathway and mitochondria pathway genes. The mitochondria pathway genes were downre...

Additional file 5: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S4. List of genes differently expressed between normal and tumor METABRIC samples and with con...

Additional file 1: Table S1. of A comprehensive meta-analysis of common genetic variants in autism spectrum conditions

Varun Warrier (560166)
Vivienne Chee (3400478)
Paula Smith (10538)
Bhismadev Chakrabarti (127590)
Simon Baron-Cohen (111352)

August 2015

Studies included and study characteristics and Table S2. Studies Excluded; Figures S1âS20. Forest ...

Additional file 1: of Brain hyperserotonemia causes autism-relevant social deficits in mice

Miho Tanaka (2309254)
Atsushi Sato (275996)
Shinya Kasai (238826)
Yoko Hagino (238822)
Hiroko Kotajima-Murakami (3335583)
Hirofumi Kashii (6010955)
Yukio Takamatsu (349184)
Yasumasa Nishito (395771)
Masumi Inagaki (364155)
Masashi Mizuguchi (276290)
F. Hall (5816357)
George Uhl (5816369)
Dennis Murphy (1779949)
Ichiro Sora (259637)
Kazutaka Ikeda (142226)

November 2018

Protocol on behavioral tests and lists of gene expression in detail. (DOCX 79 kb

Additional file 1: of Co-expression of long non-coding RNAs and autism risk genes in the developing human brain

Steven Cogill (6088238)
Anand Srivastava (230731)
Mary Yang (4724700)
Liangjiang Wang (19391)

December 2018

List of lncRNAs with their module assignment and association with ASD risk genes in the co-expressio...

Additional file 4: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

gProfileR biological process overrepresentation results of the genes contained in the significant in...

Additional file 3: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Full ASD GSEA pre-ranked enrichment results for different molecular signatures (C2, H, GO_BP, GO_CC,...

Additional file 1: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Table S1. Datasets included in our study. Table S2. Age, gender and pmi distributions between cases ...

Additional file 5: of Integrated genome-wide Alu methylation and transcriptome profiling analyses reveal novel epigenetic regulatory networks associated with autism spectrum disorder

Thanit Saeliw (5106851)
Chayanin Tangsuwansri (5106863)
Surangrat Thongkorn (5106860)
Weerasak Chonchaiya (5106857)
Kanya Suphapeetiporn (580999)
Apiwat Mutirangura (16235)
Tewin Tencomnao (2864969)
Valerie Hu (5106854)
Tewarit Sarachana (229926)

April 2018

Correlation analysis between AluS methylation and expression level of ASD subgroup L. (PDF 329Â kb

Additional file 5 of An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping

Gayathri Thillaiyampalam (4711104)
Fabio Liberante (4711101)
Liam Murray (584595)
Chris Cardwell (4676743)
Ken Mills (204775)
Shu-Dong Zhang (231229)

December 2017

Tumor vs Adjacent differentially expressed genes. The full list of 164 significant genes selected fr...

Additional file 8 of An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping

Gayathri Thillaiyampalam (4711104)
Fabio Liberante (4711101)
Liam Murray (584595)
Chris Cardwell (4676743)
Ken Mills (204775)
Shu-Dong Zhang (231229)

December 2017

Tumor vs Normal 5 sub-gene signatures. The 5 non-joint 83-gene signatures are included, each consist...

Additional file 6 of An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping

Gayathri Thillaiyampalam (4711104)
Fabio Liberante (4711101)
Liam Murray (584595)
Chris Cardwell (4676743)
Ken Mills (204775)
Shu-Dong Zhang (231229)

December 2017

Tumor vs Normal 415-gene signature KEGG pathways. Full results of the KEGG human pathway enrichment ...

Additional file 7: of Separation of breast cancer and organ microenvironment transcriptomes in metastases

Mohammad Alzubi (6431630)
Tia Turner (6431633)
Amy Olex (6431636)
Sahib Sohal (6431639)
Nicholas Tobin (4848271)
Susana Recio (6431642)
Jonas Bergh (23551)
Thomas Hatschek (22685)
Joel Parker (17174)
Carol Sartorius (6431645)
Charles Perou (3530138)
Mikhail Dozmorov (4630)
J. Harrell (6413768)

March 2019

Genes upregulated during liver metastasis; cancer and organ-specific changes. DESeq2 was used to ide...

Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Forés-Martos, Jaume
Catala-Lopez, Ferran
Sánchez-Valle, Jon
Ibáñez, Kristina
Tejero Franco, Hector
Palma-Gudiel, Helena
Climent, Joan
Pancaldi, Vera
Fañanás, Lourdes
Arango, Celso
Parellada, Mara
Baudot, Anaïs
Vogt, Daniel
Rubenstein, John L
Valencia, Alfonso
Tabarés-Seisdedos, Rafael

January 2019

Background: Epidemiological and clinical evidence points to cancer as a comorbidity in people with a...

Additional file 6: of Strong correlation of downregulated genes related to synaptic transmission and mitochondria in post-mortem autism cerebral cortex

Matthew Schwede (388038)
Shailender Nagpal (5331614)
Michael Gandal (5331605)
Neelroop Parikshak (5331608)
Karoly Mirnics (1399432)
Daniel Geschwind (406536)
Eric Morrow (5331611)

June 2018

Figure S2. Heatmaps of mitochondrial genes in the Chow et al. and Garbett et al. microarray datasets...

Additional file 5: of Strong correlation of downregulated genes related to synaptic transmission and mitochondria in post-mortem autism cerebral cortex

Matthew Schwede (388038)
Shailender Nagpal (5331614)
Michael Gandal (5331605)
Neelroop Parikshak (5331608)
Karoly Mirnics (1399432)
Daniel Geschwind (406536)
Eric Morrow (5331611)

June 2018

Table S4. Synapse pathway and mitochondria pathway genes. The mitochondria pathway genes were downre...

Additional file 5: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S4. List of genes differently expressed between normal and tumor METABRIC samples and with con...

Additional file 1: Table S1. of A comprehensive meta-analysis of common genetic variants in autism spectrum conditions

Varun Warrier (560166)
Vivienne Chee (3400478)
Paula Smith (10538)
Bhismadev Chakrabarti (127590)
Simon Baron-Cohen (111352)

August 2015

Studies included and study characteristics and Table S2. Studies Excluded; Figures S1âS20. Forest ...

Additional file 1: of Brain hyperserotonemia causes autism-relevant social deficits in mice

Miho Tanaka (2309254)
Atsushi Sato (275996)
Shinya Kasai (238826)
Yoko Hagino (238822)
Hiroko Kotajima-Murakami (3335583)
Hirofumi Kashii (6010955)
Yukio Takamatsu (349184)
Yasumasa Nishito (395771)
Masumi Inagaki (364155)
Masashi Mizuguchi (276290)
F. Hall (5816357)
George Uhl (5816369)
Dennis Murphy (1779949)
Ichiro Sora (259637)
Kazutaka Ikeda (142226)

November 2018

Protocol on behavioral tests and lists of gene expression in detail. (DOCX 79 kb

Additional file 1: of Co-expression of long non-coding RNAs and autism risk genes in the developing human brain

Steven Cogill (6088238)
Anand Srivastava (230731)
Mary Yang (4724700)
Liangjiang Wang (19391)

December 2018

List of lncRNAs with their module assignment and association with ASD risk genes in the co-expressio...

Additional file 5: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Abstract

Extracted data

Additional file 5: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Abstract

Extracted data

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