Ask
Search
My library
ORKG

ORKG Ask

Our mission is to organize scholarly knowledge and make it accessible to humans and machines.

About

About ORKG Ask
Report issue
Statistics
Contact

Legal

Terms of use
Data protection (sheet)
Imprint
Accessibility
License

Technical

We
open source
System status
Changelog
Frontend: v1.41.0
Backend: v1.13.4

We use cookies to provide a better user experience.

Data Protection

Additional file 1: of Brain hyperserotonemia causes autism-relevant social deficits in mice

Miho Tanaka (2309254)
Atsushi Sato (275996)
Shinya Kasai (238826)
Yoko Hagino (238822)
Hiroko Kotajima-Murakami (3335583)
Hirofumi Kashii (6010955)
Yukio Takamatsu (349184)
Yasumasa Nishito (395771)
Masumi Inagaki (364155)
Masashi Mizuguchi (276290)
F. Hall (5816357)
George Uhl (5816369)
Dennis Murphy (1779949)
Ichiro Sora (259637)
Kazutaka Ikeda (142226)

Publication date

November 2018

DOI

10.6084/m9.figshare.7386041.v1

Abstract

Protocol on behavioral tests and lists of gene expression in detail. (DOCX 79 kb

Extracted data

Related items

Data for: Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice

Sharon, G (via Mendeley Data)

May 2019

Raw data (excluding raw sequencing and metabolomic data) used to construct figures for manuscript. D...

Additional file 3: of Transcriptomopathies of pre- and post-symptomatic frontotemporal dementia-like mice with TDP-43 depletion in forebrain neurons

Lien-Szu Wu (6526166)
Wei-Cheng Cheng (6526169)
Chia-Ying Chen (435740)
Ming-Che Wu (6526172)
Yi-Chi Wang (4966093)
Yu-Hsiang Tseng (6526175)
Trees-Juen Chuang (17657)
C.-K. Shen (6526178)

March 2019

Table S2. Changes of the mRNA levels of social behaviour-related genes in the neocortex of TDP-43 cK...

Additional file 3 of Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities

Sumaiya Nazeen (3420563)
Nathan P. Palmer (479433)
Bonnie Berger (19458)
Isaac S. Kohane (5983)

November 2016

Supplementary figures. This PDF file contains supplementary Figures S1 through S5 and their captions...

Additional file 6: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

Tiffany Rogers (4170940)
Allison Anacker (4170928)
Travis Kerr (4170931)
C. Forsberg (4170934)
Jing Wang (1228470)
Bing Zhang (129)
Jeremy Veenstra-VanderWeele (4170937)

June 2017

Most commonly differentially expressed genes across all comparisons. The genes that had the most fre...

Additional file 1: of Autism-associated CHD8 deficiency impairs axon development and migration of cortical neurons

Qiong Xu (204847)
Yuan-yuan Liu (2575882)
Xiaoming Wang (187053)
Guo-he Tan (6105170)
Hui-ping Li (6105173)
Samuel Hulbert (6105176)
Chun-yang Li (5049653)
Chun-chun Hu (5049647)
Zhi-qi Xiong (6105179)
Xiu Xu (498635)
Yong-hui Jiang (243375)

December 2018

Validation of rescued constructs against shRNA-mediated knockdown of mouse Chd8 in transfected neuro...

Additional file 1: of Distinct neural bases of disruptive behavior and autism symptom severity in boys with autism spectrum disorder

Y. Yang (472769)
Denis Sukhodolsky (3661651)
Jiedi Lei (3661654)
Eran Dayan (182827)
Kevin Pelphrey (686685)
Pamela Ventola (3508670)

January 2017

Inclusive mask of the main effects on the contrast of social perception (BIO > SCR) and that of DMN ...

Additional file 2: of A multifaceted approach for analyzing complex phenotypic data in rodent models of autism

Ishita Das (2884475)
Marcel Estevez (6457439)
Anjali Sarkar (6457442)
Sharmila Banerjee-Basu (55082)

March 2019

Figure S1. Distribution of ASD factor in rodent data. A. The stacked plot shows that the genes compr...

Additional file 2: of Clustering the autisms using glutamate synapse protein interaction networks from cortical and hippocampal tissue of seven mouse models

Emily Brown (194826)
Jonathan Lautz (5751308)
Tessa Davis (5751311)
Edward Gniffke (5751314)
Alison VanSchoiack (5751317)
Steven Neier (5751320)
Noah Tashbook (5751323)
Chiara Nicolini (2678902)
Margaret Fahnestock (5751326)
Adam Schrum (5751329)
Stephen Smith (117894)

September 2018

Figure S1. AKT phosphorylation is reduced in VPA mice but normal in all other models examined. Relat...

Additional file 1: of 17-β estradiol increases parvalbumin levels in Pvalb heterozygous mice and attenuates behavioral phenotypes with relevance to autism core symptoms

Federica Filice (4907980)
Emanuel Lauber (4907986)
Karl Vörckel (4907983)
Markus Wöhr (73831)
Beat Schwaller (86027)

March 2018

Supplemental information on experimental details. Figure S1 A) Details on mouse husbandry and B) sel...

Additional file 3: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Full ASD GSEA pre-ranked enrichment results for different molecular signatures (C2, H, GO_BP, GO_CC,...

Additional file 3: of Scn2a haploinsufficient mice display a spectrum of phenotypes affecting anxiety, sociability, memory flexibility and ampakine CX516 rescues their hyperactivity

Tetsuya Tatsukawa (6525443)
Matthieu Raveau (160575)
Ikuo Ogiwara (470470)
Satoko Hattori (233107)
Hiroyuki Miyamoto (6525446)
Emi Mazaki (6525449)
Shigeyoshi Itohara (67545)
Tsuyoshi Miyakawa (105708)
Mauricio Montal (268462)
Kazuhiro Yamakawa (179894)

March 2019

Additional material and methods for experiments displayed in the Additional file 2. Includes protoco...

Additional file 1: of Quantitative autism symptom patterns recapitulate differential mechanisms of genetic transmission in single and multiple incidence families

Thomas Frazier (3459524)
Eric Youngstrom (3459521)
Antonio Hardan (3459527)
Stelios Georgiades (3459530)
John Constantino (3459533)
Charis Eng (180844)

October 2015

Social Communication Questionnaire (SCQ) and Social Responsiveness Scale (SRS) item mapping to DSM-5...

Additional file 1 of Auditory processing in rodent models of autism: a systematic review

Maya Wilde (13541783)
Lena Constantin (13541786)
Peter R. Thorne (13541789)
Johanna M. Montgomery (9213290)
Ethan K. Scott (9385643)
Juliette E. Cheyne (13541792)

August 2022

Additional file 1: Supplementary Table 1. Primary research articles which passed the criteria for in...

Additional file 7: of A multifaceted approach for analyzing complex phenotypic data in rodent models of autism

Ishita Das (2884475)
Marcel Estevez (6457439)
Anjali Sarkar (6457442)
Sharmila Banerjee-Basu (55082)

March 2019

Figure S5. Phenotypes of Shank3 KI models. A) The HM KI models display several core phenotypes inclu...

Additional file 4: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

gProfileR biological process overrepresentation results of the genes contained in the significant in...

Data for: Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice

Sharon, G (via Mendeley Data)

May 2019

Raw data (excluding raw sequencing and metabolomic data) used to construct figures for manuscript. D...

Additional file 3: of Transcriptomopathies of pre- and post-symptomatic frontotemporal dementia-like mice with TDP-43 depletion in forebrain neurons

Lien-Szu Wu (6526166)
Wei-Cheng Cheng (6526169)
Chia-Ying Chen (435740)
Ming-Che Wu (6526172)
Yi-Chi Wang (4966093)
Yu-Hsiang Tseng (6526175)
Trees-Juen Chuang (17657)
C.-K. Shen (6526178)

March 2019

Table S2. Changes of the mRNA levels of social behaviour-related genes in the neocortex of TDP-43 cK...

Additional file 3 of Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities

Sumaiya Nazeen (3420563)
Nathan P. Palmer (479433)
Bonnie Berger (19458)
Isaac S. Kohane (5983)

November 2016

Supplementary figures. This PDF file contains supplementary Figures S1 through S5 and their captions...

Additional file 6: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

Tiffany Rogers (4170940)
Allison Anacker (4170928)
Travis Kerr (4170931)
C. Forsberg (4170934)
Jing Wang (1228470)
Bing Zhang (129)
Jeremy Veenstra-VanderWeele (4170937)

June 2017

Most commonly differentially expressed genes across all comparisons. The genes that had the most fre...

Additional file 1: of Autism-associated CHD8 deficiency impairs axon development and migration of cortical neurons

Qiong Xu (204847)
Yuan-yuan Liu (2575882)
Xiaoming Wang (187053)
Guo-he Tan (6105170)
Hui-ping Li (6105173)
Samuel Hulbert (6105176)
Chun-yang Li (5049653)
Chun-chun Hu (5049647)
Zhi-qi Xiong (6105179)
Xiu Xu (498635)
Yong-hui Jiang (243375)

December 2018

Validation of rescued constructs against shRNA-mediated knockdown of mouse Chd8 in transfected neuro...

Additional file 1: of Distinct neural bases of disruptive behavior and autism symptom severity in boys with autism spectrum disorder

Y. Yang (472769)
Denis Sukhodolsky (3661651)
Jiedi Lei (3661654)
Eran Dayan (182827)
Kevin Pelphrey (686685)
Pamela Ventola (3508670)

January 2017

Inclusive mask of the main effects on the contrast of social perception (BIO > SCR) and that of DMN ...

Additional file 2: of A multifaceted approach for analyzing complex phenotypic data in rodent models of autism

Ishita Das (2884475)
Marcel Estevez (6457439)
Anjali Sarkar (6457442)
Sharmila Banerjee-Basu (55082)

March 2019

Figure S1. Distribution of ASD factor in rodent data. A. The stacked plot shows that the genes compr...

Additional file 2: of Clustering the autisms using glutamate synapse protein interaction networks from cortical and hippocampal tissue of seven mouse models

Emily Brown (194826)
Jonathan Lautz (5751308)
Tessa Davis (5751311)
Edward Gniffke (5751314)
Alison VanSchoiack (5751317)
Steven Neier (5751320)
Noah Tashbook (5751323)
Chiara Nicolini (2678902)
Margaret Fahnestock (5751326)
Adam Schrum (5751329)
Stephen Smith (117894)

September 2018

Figure S1. AKT phosphorylation is reduced in VPA mice but normal in all other models examined. Relat...

Additional file 1: of 17-β estradiol increases parvalbumin levels in Pvalb heterozygous mice and attenuates behavioral phenotypes with relevance to autism core symptoms

Federica Filice (4907980)
Emanuel Lauber (4907986)
Karl Vörckel (4907983)
Markus Wöhr (73831)
Beat Schwaller (86027)

March 2018

Supplemental information on experimental details. Figure S1 A) Details on mouse husbandry and B) sel...

Additional file 3: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Full ASD GSEA pre-ranked enrichment results for different molecular signatures (C2, H, GO_BP, GO_CC,...

Additional file 3: of Scn2a haploinsufficient mice display a spectrum of phenotypes affecting anxiety, sociability, memory flexibility and ampakine CX516 rescues their hyperactivity

Tetsuya Tatsukawa (6525443)
Matthieu Raveau (160575)
Ikuo Ogiwara (470470)
Satoko Hattori (233107)
Hiroyuki Miyamoto (6525446)
Emi Mazaki (6525449)
Shigeyoshi Itohara (67545)
Tsuyoshi Miyakawa (105708)
Mauricio Montal (268462)
Kazuhiro Yamakawa (179894)

March 2019

Additional material and methods for experiments displayed in the Additional file 2. Includes protoco...

Additional file 1: of Quantitative autism symptom patterns recapitulate differential mechanisms of genetic transmission in single and multiple incidence families

Thomas Frazier (3459524)
Eric Youngstrom (3459521)
Antonio Hardan (3459527)
Stelios Georgiades (3459530)
John Constantino (3459533)
Charis Eng (180844)

October 2015

Social Communication Questionnaire (SCQ) and Social Responsiveness Scale (SRS) item mapping to DSM-5...

Additional file 1 of Auditory processing in rodent models of autism: a systematic review

Maya Wilde (13541783)
Lena Constantin (13541786)
Peter R. Thorne (13541789)
Johanna M. Montgomery (9213290)
Ethan K. Scott (9385643)
Juliette E. Cheyne (13541792)

August 2022

Additional file 1: Supplementary Table 1. Primary research articles which passed the criteria for in...

Additional file 7: of A multifaceted approach for analyzing complex phenotypic data in rodent models of autism

Ishita Das (2884475)
Marcel Estevez (6457439)
Anjali Sarkar (6457442)
Sharmila Banerjee-Basu (55082)

March 2019

Figure S5. Phenotypes of Shank3 KI models. A) The HM KI models display several core phenotypes inclu...

Additional file 4: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

gProfileR biological process overrepresentation results of the genes contained in the significant in...

Data for: Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice

Sharon, G (via Mendeley Data)

May 2019

Raw data (excluding raw sequencing and metabolomic data) used to construct figures for manuscript. D...

Additional file 3: of Transcriptomopathies of pre- and post-symptomatic frontotemporal dementia-like mice with TDP-43 depletion in forebrain neurons

Lien-Szu Wu (6526166)
Wei-Cheng Cheng (6526169)
Chia-Ying Chen (435740)
Ming-Che Wu (6526172)
Yi-Chi Wang (4966093)
Yu-Hsiang Tseng (6526175)
Trees-Juen Chuang (17657)
C.-K. Shen (6526178)

March 2019

Table S2. Changes of the mRNA levels of social behaviour-related genes in the neocortex of TDP-43 cK...

Additional file 3 of Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities

Sumaiya Nazeen (3420563)
Nathan P. Palmer (479433)
Bonnie Berger (19458)
Isaac S. Kohane (5983)

November 2016

Supplementary figures. This PDF file contains supplementary Figures S1 through S5 and their captions...