Additional file 2: of Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains
- Marc Lorentzen (6660605)
- Hugo Campbell-Sills (573476)
- Tue Jorgensen (6660608)
- Tue Nielsen (6660611)
- Monika Coton (118374)
- Emmanuel Coton (758107)
- Lars Hansen (206874)
- Patrick Lucas (1516321)
Publication date
May 2019
DOIAbstract
Figure S2. Variable regions in groups C and D genomes. MicroScope RGP-finder was used to identify specific regions of (a) group C strain CRBO_1381 against the 5 group D strains and of (b) group D strain UBOCC-A-315001 compared to the 21 group C strains. Specific regions are shown in grey. Supporting algorithms are shown in blue and black (Interpolated Variable Order Motifs and Regions of Genomic Plasticity). tRNAs are in pink. (c) MaGeâs RGP-finder tool was employed to locate all variable regions, determine their size and the number of CDS they contain (PDF 466 kb
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