Additional file 2: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Additional file 2: of One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070

Nassima Illikoud (5845088)
Christophe Klopp (120981)
Alain Roulet (789368)
Olivier Bouchez (104385)
Nathalie Marsaud (5845091)
Emmanuel JaffrĂ¨s (5845094)
Monique Zagorec (460696)

October 2018

Figure S1. Schematic representation of phage content of the four B. thermosphacta strains. The phage...

Additional file 1: of Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast

Cene Gostinčar (446261)
Jason Stajich (5225312)
Jerneja Zupančič (849795)
Polona Zalar (536680)
Nina Gunde-Cimerman (494801)

May 2018

Contains figures illustrating the mapping of haploid genomes C and D to diploid genomes of H. wernec...

Additional file 1: of A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

Elvire Berthenet (3775177)
Koji Yahara (210105)
Kaisa Thorell (3411728)
Ben Pascoe (522026)
Guillaume Meric (3179310)
Jane Mikhail (3263613)
Lars Engstrand (48331)
Helena Enroth (5590526)
Alain Burette (5590529)
Francis Megraud (5590532)
Christine Varon (190157)
John Atherton (301088)
Sinead Smith (5590535)
Thomas Wilkinson (736368)
Matthew Hitchings (5590538)
Daniel Falush (46436)
Samuel Sheppard (3314742)

August 2018

Figure S1. Co-ancestry matrix with population structure of 565 global H. pylori isolates. The colour...

Additional file 1: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Teresa Mohr (3502610)
Habibu Aliyu (5495321)
Raphael KĂźchlin (5495318)
Michaela Zwick (5495324)
Don Cowan (2605876)
Anke Neumann (15638)
Pieter de Maayer (6059294)

December 2018

Growth curve and gas composition during the cultivation of P. thermoglucosidasius), DSM 2542T (A), D...

Additional file 4: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Teresa Mohr (3502610)
Habibu Aliyu (5495321)
Raphael KĂźchlin (5495318)
Michaela Zwick (5495324)
Don Cowan (2605876)
Anke Neumann (15638)
Pieter de Maayer (6059294)

December 2018

SNPs occurring in the CODH-NiFe group 4a locus genes of the compared P. thermoglucosidasius strains....

Additional file 3: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Teresa Mohr (3502610)
Habibu Aliyu (5495321)
Raphael KĂźchlin (5495318)
Michaela Zwick (5495324)
Don Cowan (2605876)
Anke Neumann (15638)
Pieter de Maayer (6059294)

December 2018

Annotations of the protein families shared and unique among the compared P. thermoglucosidasius stra...

Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Mohr, Teresa
Aliyu, Habibu
Kuchlin, Raphael
Zwick, Michaela
Cowan, Don A.
Neumann, Anke
De Maayer, Pieter

January 2018

BACKGROUND : The facultatively anaerobic thermophile Parageobacillus thermoglucosidasius produces hy...

Additional file 1: of Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA

Inmaculada García-Romero (3462461)
Antonio Pérez-Pulido (3462458)
Yolanda González-Flores (3462464)
Francisca Reyes-Ramírez (458207)
Eduardo Santero (12083)
Belén Floriano (3462455)

February 2016

Analysis of the oriC genomic region. A. Genetic organization around the predicted oriC region in sev...

Additional file 1: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

Madhan Tirumalai (39791)
Victor Stepanov (3407987)
Andrea WĂźnsche (5354492)
Saied Montazari (3162378)
Racquel Gonzalez (5354489)
Kasturi Venkateswaran (5354486)
George Fox (3407993)

June 2018

Table S1. In silico DNA-DNA hybridization (DDH) values showing Genome-genome distance [50] relations...

Additional file 2: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Calculation of isDDH between the genome sequences of D. fangzhongdai PA1 and other Dickeya strains. ...

Additional file 2: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Mohamed Daas (5852339)
Albert Rosana (5803577)
Jeella Acedo (5852342)
Malika Douzane (5852345)
Farida Nateche (5852348)
Salima Kebbouche-Gana (425065)
John Vederas (5852351)

October 2018

Table S1. Average nucleotide identity (ANI) and digital DNA:DNA Hybridization (dDDH) between the gen...

Additional file 3: of Comparative genomic analysis of Bacillus paralicheniformis MDJK30 with its closely related species reveals an evolutionary relationship between B. paralicheniformis and B. licheniformis

Yuhui Du (4889518)
Jinjin Ma (3937364)
Zhiqiu Yin (4374091)
Kai Liu (159026)
Gan Yao (6582068)
Wenfeng Xu (311895)
Lingchao Fan (6582071)
Binghai Du (6582074)
Yanqin Ding (219852)
Chengqiang Wang (6582077)

April 2019

Figure S2. Comparative analysis of biosynthetic gene clusters for secondary metabolism from MDJK30 a...

Additional file 1: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Figure S1. Phylogenetic relatedness of the analyzed P. parmentieri strains: A. Genomic Average Nucle...

Additional file 7: of Comparative genomics analysis to differentiate metabolic and virulence gene potential in gastric versus enterohepatic Helicobacter species

Anthony Mannion (4664182)
Zeli Shen (229329)
James Fox (306484)

November 2018

Figure S1. A) Genome sizes were plotted against the number of annotated protein coding sequences (CD...

Additional file 2: of Comparative genomics analysis to differentiate metabolic and virulence gene potential in gastric versus enterohepatic Helicobacter species

Anthony Mannion (4664182)
Zeli Shen (229329)
James Fox (306484)

November 2018

Supplementary Results/Discussion Section (Additional file 7: Figure S1). (DOCX 47 kb

Additional file 2: of One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070

Nassima Illikoud (5845088)
Christophe Klopp (120981)
Alain Roulet (789368)
Olivier Bouchez (104385)
Nathalie Marsaud (5845091)
Emmanuel JaffrĂ¨s (5845094)
Monique Zagorec (460696)

October 2018

Figure S1. Schematic representation of phage content of the four B. thermosphacta strains. The phage...

Additional file 1: of Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast

Cene Gostinčar (446261)
Jason Stajich (5225312)
Jerneja Zupančič (849795)
Polona Zalar (536680)
Nina Gunde-Cimerman (494801)

May 2018

Contains figures illustrating the mapping of haploid genomes C and D to diploid genomes of H. wernec...

Additional file 1: of A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

Elvire Berthenet (3775177)
Koji Yahara (210105)
Kaisa Thorell (3411728)
Ben Pascoe (522026)
Guillaume Meric (3179310)
Jane Mikhail (3263613)
Lars Engstrand (48331)
Helena Enroth (5590526)
Alain Burette (5590529)
Francis Megraud (5590532)
Christine Varon (190157)
John Atherton (301088)
Sinead Smith (5590535)
Thomas Wilkinson (736368)
Matthew Hitchings (5590538)
Daniel Falush (46436)
Samuel Sheppard (3314742)

August 2018

Figure S1. Co-ancestry matrix with population structure of 565 global H. pylori isolates. The colour...

Additional file 1: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Teresa Mohr (3502610)
Habibu Aliyu (5495321)
Raphael KĂźchlin (5495318)
Michaela Zwick (5495324)
Don Cowan (2605876)
Anke Neumann (15638)
Pieter de Maayer (6059294)

December 2018

Growth curve and gas composition during the cultivation of P. thermoglucosidasius), DSM 2542T (A), D...

Additional file 4: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Teresa Mohr (3502610)
Habibu Aliyu (5495321)
Raphael KĂźchlin (5495318)
Michaela Zwick (5495324)
Don Cowan (2605876)
Anke Neumann (15638)
Pieter de Maayer (6059294)

December 2018

SNPs occurring in the CODH-NiFe group 4a locus genes of the compared P. thermoglucosidasius strains....

Additional file 3: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Teresa Mohr (3502610)
Habibu Aliyu (5495321)
Raphael KĂźchlin (5495318)
Michaela Zwick (5495324)
Don Cowan (2605876)
Anke Neumann (15638)
Pieter de Maayer (6059294)

December 2018

Annotations of the protein families shared and unique among the compared P. thermoglucosidasius stra...

Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Mohr, Teresa
Aliyu, Habibu
Kuchlin, Raphael
Zwick, Michaela
Cowan, Don A.
Neumann, Anke
De Maayer, Pieter

January 2018

BACKGROUND : The facultatively anaerobic thermophile Parageobacillus thermoglucosidasius produces hy...

Additional file 1: of Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA

Inmaculada García-Romero (3462461)
Antonio Pérez-Pulido (3462458)
Yolanda González-Flores (3462464)
Francisca Reyes-Ramírez (458207)
Eduardo Santero (12083)
Belén Floriano (3462455)

February 2016

Analysis of the oriC genomic region. A. Genetic organization around the predicted oriC region in sev...

Additional file 1: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

Madhan Tirumalai (39791)
Victor Stepanov (3407987)
Andrea WĂźnsche (5354492)
Saied Montazari (3162378)
Racquel Gonzalez (5354489)
Kasturi Venkateswaran (5354486)
George Fox (3407993)

June 2018

Table S1. In silico DNA-DNA hybridization (DDH) values showing Genome-genome distance [50] relations...

Additional file 2: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Calculation of isDDH between the genome sequences of D. fangzhongdai PA1 and other Dickeya strains. ...

Additional file 2: of Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough

Mohamed Daas (5852339)
Albert Rosana (5803577)
Jeella Acedo (5852342)
Malika Douzane (5852345)
Farida Nateche (5852348)
Salima Kebbouche-Gana (425065)
John Vederas (5852351)

October 2018

Table S1. Average nucleotide identity (ANI) and digital DNA:DNA Hybridization (dDDH) between the gen...

Additional file 3: of Comparative genomic analysis of Bacillus paralicheniformis MDJK30 with its closely related species reveals an evolutionary relationship between B. paralicheniformis and B. licheniformis

Yuhui Du (4889518)
Jinjin Ma (3937364)
Zhiqiu Yin (4374091)
Kai Liu (159026)
Gan Yao (6582068)
Wenfeng Xu (311895)
Lingchao Fan (6582071)
Binghai Du (6582074)
Yanqin Ding (219852)
Chengqiang Wang (6582077)

April 2019

Figure S2. Comparative analysis of biosynthetic gene clusters for secondary metabolism from MDJK30 a...

Additional file 1: of High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

S. Zoledowska (5863412)
A. Motyka-Pomagruk (5863415)
W. Sledz (5863418)
A. Mengoni (5863421)
E. Lojkowska (5863427)

October 2018

Figure S1. Phylogenetic relatedness of the analyzed P. parmentieri strains: A. Genomic Average Nucle...

Additional file 7: of Comparative genomics analysis to differentiate metabolic and virulence gene potential in gastric versus enterohepatic Helicobacter species

Anthony Mannion (4664182)
Zeli Shen (229329)
James Fox (306484)

November 2018

Figure S1. A) Genome sizes were plotted against the number of annotated protein coding sequences (CD...

Additional file 2: of Comparative genomics analysis to differentiate metabolic and virulence gene potential in gastric versus enterohepatic Helicobacter species

Anthony Mannion (4664182)
Zeli Shen (229329)
James Fox (306484)

November 2018

Supplementary Results/Discussion Section (Additional file 7: Figure S1). (DOCX 47 kb

Additional file 2: of One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070

Nassima Illikoud (5845088)
Christophe Klopp (120981)
Alain Roulet (789368)
Olivier Bouchez (104385)
Nathalie Marsaud (5845091)
Emmanuel JaffrĂ¨s (5845094)
Monique Zagorec (460696)

October 2018

Figure S1. Schematic representation of phage content of the four B. thermosphacta strains. The phage...

Additional file 1: of Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast

Cene Gostinčar (446261)
Jason Stajich (5225312)
Jerneja Zupančič (849795)
Polona Zalar (536680)
Nina Gunde-Cimerman (494801)

May 2018

Contains figures illustrating the mapping of haploid genomes C and D to diploid genomes of H. wernec...

Additional file 1: of A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

Elvire Berthenet (3775177)
Koji Yahara (210105)
Kaisa Thorell (3411728)
Ben Pascoe (522026)
Guillaume Meric (3179310)
Jane Mikhail (3263613)
Lars Engstrand (48331)
Helena Enroth (5590526)
Alain Burette (5590529)
Francis Megraud (5590532)
Christine Varon (190157)
John Atherton (301088)
Sinead Smith (5590535)
Thomas Wilkinson (736368)
Matthew Hitchings (5590538)
Daniel Falush (46436)
Samuel Sheppard (3314742)

August 2018

Figure S1. Co-ancestry matrix with population structure of 565 global H. pylori isolates. The colour...

Additional file 2: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Abstract

Extracted data

Additional file 2: of Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities

Abstract

Extracted data

Related items

Related items