Additional file 4: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Additional file 1: of A genome wide association study for the number of animals born dead in domestic pigs

Pingxian Wu (5074019)
Kai Wang (21246)
Jie Zhou (28945)
Qiang Yang (135832)
Xidi Yang (6183518)
Anan Jiang (3988364)
Yanzhi Jiang (785400)
Mingzhou Li (112100)
Li Zhu (67404)
Lin Bai (338207)
Xuewei Li (112102)
Guoqing Tang (785399)

January 2019

Table S1. Summary of significant chromosome regions including genomic level (0.05/N) for NM in Landr...

Additional file 6 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 6: Fig. S6. The Manhattan plots of GWAS for the number of left and right teats trait...

Additional file 3: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S2. Genome-wide estimated FST values between different contrasts of breed groups for all loci ...

Additional file 8: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Alexander Grahofer (6682805)
Anna Letko (4393642)
Irene HĂ¤fliger (6682808)
Vidhya Jagannathan (13914)
Alain Ducos (576225)
Olivia Richard (6682811)
Vanessa Peter (6682814)
Heiko Nathues (574043)
Cord DrĂśgemĂźller (3428597)

May 2019

Karyotype of the boar: 38, XY, t (8,14). Note that the two affected chromosomes show an unobvious ab...

Additional file 7: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Alexander Grahofer (6682805)
Anna Letko (4393642)
Irene HĂ¤fliger (6682808)
Vidhya Jagannathan (13914)
Alain Ducos (576225)
Olivia Richard (6682811)
Vanessa Peter (6682814)
Heiko Nathues (574043)
Cord DrĂśgemĂźller (3428597)

May 2019

IGV snapshot indicating the translocation. Note the reduced coverage on chromosome 8 and the increas...

Additional file 5: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Alexander Grahofer (6682805)
Anna Letko (4393642)
Irene HĂ¤fliger (6682808)
Vidhya Jagannathan (13914)
Alain Ducos (576225)
Olivia Richard (6682811)
Vanessa Peter (6682814)
Heiko Nathues (574043)
Cord DrĂśgemĂźller (3428597)

May 2019

Examples of log R ratio (LRR) plots. The LRR is shown along the chromosomes for all SNVs on the arra...

Additional file 6: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Alexander Grahofer (6682805)
Anna Letko (4393642)
Irene HĂ¤fliger (6682808)
Vidhya Jagannathan (13914)
Alain Ducos (576225)
Olivia Richard (6682811)
Vanessa Peter (6682814)
Heiko Nathues (574043)
Cord DrĂśgemĂźller (3428597)

May 2019

Segregation of SNV alleles. In all 6 examined families for both parents alternative homozygous SNVs ...

Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Grahofer, Alexander
Letko, Anna
Häfliger, Irene Monika
Jagannathan, Vidya
Ducos, Alain
Richard, Olivia
Peter, Vanessa Georgina
Nathues, Heiko
Drögemüller, Cord

January 2019

BACKGROUND: Palatoschisis or cleft palate is a known anomaly in pigs resulting in their death. Howe...

Additional file 1: of Genetic diversity, extent of linkage disequilibrium and persistence of gametic phase in Canadian pigs

Daniela Grossi (3688171)
Mohsen Jafarikia (3688168)
Luiz Brito (3664843)
Marcos Buzanskas (3407801)
Mehdi Sargolzaei (551369)
FlĂĄvio Schenkel (3688210)

January 2017

List of possible misplaced SNP. Containing the names of the 608 SNPs identified as possible misplace...

Additional file 8: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S6. Occurring haplotypes in region 52 to 61Â Mb on chromosome X and numbers of carrier animals...

Additional file 6: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Figure S2. Neighbor-joining tree based on all SNPs in the second part of the selective sweep region ...

Additional file 7: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of fil...

Additional file 1: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Figure S1. Multi-Dimensional-Scaling of the distance matrix underlying the phylogenetic tree, based ...

Additional file 9: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S7. Genes located in first region of large sweep on chromosome X. (XLSX 9 kb

Additional file 3 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 3: Fig. S3. The LD block in significant chromosome regions located in Sus scrofa chr...

Additional file 1: of A genome wide association study for the number of animals born dead in domestic pigs

Pingxian Wu (5074019)
Kai Wang (21246)
Jie Zhou (28945)
Qiang Yang (135832)
Xidi Yang (6183518)
Anan Jiang (3988364)
Yanzhi Jiang (785400)
Mingzhou Li (112100)
Li Zhu (67404)
Lin Bai (338207)
Xuewei Li (112102)
Guoqing Tang (785399)

January 2019

Table S1. Summary of significant chromosome regions including genomic level (0.05/N) for NM in Landr...

Additional file 6 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 6: Fig. S6. The Manhattan plots of GWAS for the number of left and right teats trait...

Additional file 3: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S2. Genome-wide estimated FST values between different contrasts of breed groups for all loci ...

Additional file 8: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Alexander Grahofer (6682805)
Anna Letko (4393642)
Irene HĂ¤fliger (6682808)
Vidhya Jagannathan (13914)
Alain Ducos (576225)
Olivia Richard (6682811)
Vanessa Peter (6682814)
Heiko Nathues (574043)
Cord DrĂśgemĂźller (3428597)

May 2019

Karyotype of the boar: 38, XY, t (8,14). Note that the two affected chromosomes show an unobvious ab...

Additional file 7: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Alexander Grahofer (6682805)
Anna Letko (4393642)
Irene HĂ¤fliger (6682808)
Vidhya Jagannathan (13914)
Alain Ducos (576225)
Olivia Richard (6682811)
Vanessa Peter (6682814)
Heiko Nathues (574043)
Cord DrĂśgemĂźller (3428597)

May 2019

IGV snapshot indicating the translocation. Note the reduced coverage on chromosome 8 and the increas...

Additional file 5: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Alexander Grahofer (6682805)
Anna Letko (4393642)
Irene HĂ¤fliger (6682808)
Vidhya Jagannathan (13914)
Alain Ducos (576225)
Olivia Richard (6682811)
Vanessa Peter (6682814)
Heiko Nathues (574043)
Cord DrĂśgemĂźller (3428597)

May 2019

Examples of log R ratio (LRR) plots. The LRR is shown along the chromosomes for all SNVs on the arra...

Additional file 6: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Alexander Grahofer (6682805)
Anna Letko (4393642)
Irene HĂ¤fliger (6682808)
Vidhya Jagannathan (13914)
Alain Ducos (576225)
Olivia Richard (6682811)
Vanessa Peter (6682814)
Heiko Nathues (574043)
Cord DrĂśgemĂźller (3428597)

May 2019

Segregation of SNV alleles. In all 6 examined families for both parents alternative homozygous SNVs ...

Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Grahofer, Alexander
Letko, Anna
Häfliger, Irene Monika
Jagannathan, Vidya
Ducos, Alain
Richard, Olivia
Peter, Vanessa Georgina
Nathues, Heiko
Drögemüller, Cord

January 2019

BACKGROUND: Palatoschisis or cleft palate is a known anomaly in pigs resulting in their death. Howe...

Additional file 1: of Genetic diversity, extent of linkage disequilibrium and persistence of gametic phase in Canadian pigs

Daniela Grossi (3688171)
Mohsen Jafarikia (3688168)
Luiz Brito (3664843)
Marcos Buzanskas (3407801)
Mehdi Sargolzaei (551369)
FlĂĄvio Schenkel (3688210)

January 2017

List of possible misplaced SNP. Containing the names of the 608 SNPs identified as possible misplace...

Additional file 8: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S6. Occurring haplotypes in region 52 to 61Â Mb on chromosome X and numbers of carrier animals...

Additional file 6: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Figure S2. Neighbor-joining tree based on all SNPs in the second part of the selective sweep region ...

Additional file 7: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of fil...

Additional file 1: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Figure S1. Multi-Dimensional-Scaling of the distance matrix underlying the phylogenetic tree, based ...

Additional file 9: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S7. Genes located in first region of large sweep on chromosome X. (XLSX 9 kb

Additional file 3 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 3: Fig. S3. The LD block in significant chromosome regions located in Sus scrofa chr...

Additional file 1: of A genome wide association study for the number of animals born dead in domestic pigs

Pingxian Wu (5074019)
Kai Wang (21246)
Jie Zhou (28945)
Qiang Yang (135832)
Xidi Yang (6183518)
Anan Jiang (3988364)
Yanzhi Jiang (785400)
Mingzhou Li (112100)
Li Zhu (67404)
Lin Bai (338207)
Xuewei Li (112102)
Guoqing Tang (785399)

January 2019

Table S1. Summary of significant chromosome regions including genomic level (0.05/N) for NM in Landr...

Additional file 6 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 6: Fig. S6. The Manhattan plots of GWAS for the number of left and right teats trait...

Additional file 3: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S2. Genome-wide estimated FST values between different contrasts of breed groups for all loci ...

Additional file 4: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Abstract

Extracted data

Additional file 4: of Chromosomal imbalance in pigs showing a syndromic form of cleft palate

Abstract

Extracted data

Topics

Related items

Related items

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