Segregation of SNV alleles. In all 6 examined families for both parents alternative homozygous SNVs (red/blue) were selected to determine their inheritance pattern. Note that in all affected piglets paternal homozygous SNVs show an underrepresentation on chromosome 8 and an overrepresentation on chromosome 14. For SNVs where the dams were homozygous for the alternative allele, an opposite segregation could be observed. (PDF 2183 kb
Additional file 3: Fig. S3. The LD block in significant chromosome regions located in Sus scrofa chr...
Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of fil...
Distribution of ASE-SNPs along pig autosomal chromosomes. The histograms represent the distribution ...
Mendelian error mapping. The genomic position of the 3178 SNVs showing Mendelian errors is shown alo...
IGV snapshot indicating the translocation. Note the reduced coverage on chromosome 8 and the increas...
Karyotype of the boar: 38, XY, t (8,14). Note that the two affected chromosomes show an unobvious ab...
Examples of log R ratio (LRR) plots. The LRR is shown along the chromosomes for all SNVs on the arra...
BACKGROUND: Palatoschisis or cleft palate is a known anomaly in pigs resulting in their death. Howe...
List of possible misplaced SNP. Containing the names of the 608 SNPs identified as possible misplace...
F inbreeding coefficient based on observed and expected autosomal homozygous genotype counts. Figure...
Additional file 6: Fig. S6. The Manhattan plots of GWAS for the number of left and right teats trait...
Figure S2. Neighbor-joining tree based on all SNPs in the second part of the selective sweep region ...
Additional file 2: Fig. S2. The distribution (A) and functional classification (B) of the Imputed si...
Linkage disequilibrium plot for SNP markers on chromosome 7 between 103 and 105Â Mb. Figure created ...
Additional file 1: Fig. S1. The distribution (A) and functional classification (B) of the detected s...
Additional file 3: Fig. S3. The LD block in significant chromosome regions located in Sus scrofa chr...
Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of fil...
Distribution of ASE-SNPs along pig autosomal chromosomes. The histograms represent the distribution ...
Mendelian error mapping. The genomic position of the 3178 SNVs showing Mendelian errors is shown alo...
IGV snapshot indicating the translocation. Note the reduced coverage on chromosome 8 and the increas...
Karyotype of the boar: 38, XY, t (8,14). Note that the two affected chromosomes show an unobvious ab...
Examples of log R ratio (LRR) plots. The LRR is shown along the chromosomes for all SNVs on the arra...
BACKGROUND: Palatoschisis or cleft palate is a known anomaly in pigs resulting in their death. Howe...
List of possible misplaced SNP. Containing the names of the 608 SNPs identified as possible misplace...
F inbreeding coefficient based on observed and expected autosomal homozygous genotype counts. Figure...
Additional file 6: Fig. S6. The Manhattan plots of GWAS for the number of left and right teats trait...
Figure S2. Neighbor-joining tree based on all SNPs in the second part of the selective sweep region ...
Additional file 2: Fig. S2. The distribution (A) and functional classification (B) of the Imputed si...
Linkage disequilibrium plot for SNP markers on chromosome 7 between 103 and 105Â Mb. Figure created ...
Additional file 1: Fig. S1. The distribution (A) and functional classification (B) of the detected s...
Additional file 3: Fig. S3. The LD block in significant chromosome regions located in Sus scrofa chr...
Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of fil...
Distribution of ASE-SNPs along pig autosomal chromosomes. The histograms represent the distribution ...