Additional file 2: of A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis

Additional file 1 of Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle

Zexi Cai (5211698)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

January 2019

Figure S1. The locuszoom [1] figure of previous report causative mutation of DGAT1 of the genome-wid...

Additional file 7: Table S8. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Common significant SNPs (genome-wise 1Â % FDR) identified among all fertility related traits (CTFS a...

Additional file 4: Table S3. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing previously identified production or fertility trait QTL that overlap with the ...

Additional file 4: of A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis

Nina Poulsen (3585842)
Randall Robinson (4216726)
Daniela Barile (561540)
Lotte Larsen (3585839)
Bart Buitenhuis (3404813)

May 2019

Figure S4. QQ-plots of P-values for milk oligosaccharides in Danish Jersey. (PDF 734 kb

Additional file 3: of A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis

Nina Poulsen (3585842)
Randall Robinson (4216726)
Daniela Barile (561540)
Lotte Larsen (3585839)
Bart Buitenhuis (3404813)

May 2019

Figure S3. QQ-plots of P-values for milk oligosaccharides in Danish Holstein. (PDF 713 kb

A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis.

Poulsen, Nina A
Robinson, Randall C
Barile, Daniela
Larsen, Lotte B
Buitenhuis, Bart

May 2019

BackgroundHuman milk oligosaccharides (OS) play a key role in brain and gut microbiota development o...

Additional file 4: Table S2. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

Bart Buitenhuis (3404813)
Nina Poulsen (3585842)
Grum Gebreyesus (3585836)
Lotte Larsen (3585839)

August 2016

Significant SNP markers (FDR < 0.10) for the major milk proteins and their post translational modifi...

Additional file 3: Table S1. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

Bart Buitenhuis (3404813)
Nina Poulsen (3585842)
Grum Gebreyesus (3585836)
Lotte Larsen (3585839)

August 2016

Significant SNP markers (FDR < 0.10) for the major milk proteins and their post translational modifi...

Additional file 3: Table S1. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 8: Table S2. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 1: of Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle

Zexi Cai (5211698)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

May 2018

Figure S1. The locuszoom figure of previous report causative mutation of DGAT1 of the genome-wide as...

Additional file 2: of Multi-population GWAS and enrichment analyses reveal novel genomic regions and promising candidate genes underlying bovine milk fatty acid composition

G. Gebreyesus (6247244)
A. Buitenhuis (6431243)
N. Poulsen (6431246)
M. Visker (6431249)
Q. Zhang (1740952)
H. Valenberg (6431252)
D. Sun (6431255)
H. Bovenhuis (761608)

March 2019

List of genes identified as enriched using the DAVID based enrichment analysis. Gene names and the p...

Additional file 2: of Single nucleotide polymorphisms in candidate genes associated with milk yield in Argentinean Holstein and Holstein x Jersey cows

María Raschia (4852084)
Juan Nani (4852090)
Daniel Maizon (6080495)
María Beribe (4852081)
Ariel Amadio (3360812)
Mario Poli (522376)

January 2019

Genotypic and allelic frequencies obtained for the SNPs that passed the quality control. (DOC 62 kb

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Additional file 2: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

SNPs with Bonferroni corrected p-values higher than 0.05 (−log10(p) ≥ 8.50) for the fat yield. Colum...

Additional file 1 of Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle

Zexi Cai (5211698)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

January 2019

Figure S1. The locuszoom [1] figure of previous report causative mutation of DGAT1 of the genome-wid...

Additional file 7: Table S8. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Common significant SNPs (genome-wise 1Â % FDR) identified among all fertility related traits (CTFS a...

Additional file 4: Table S3. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing previously identified production or fertility trait QTL that overlap with the ...

Additional file 4: of A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis

Nina Poulsen (3585842)
Randall Robinson (4216726)
Daniela Barile (561540)
Lotte Larsen (3585839)
Bart Buitenhuis (3404813)

May 2019

Figure S4. QQ-plots of P-values for milk oligosaccharides in Danish Jersey. (PDF 734 kb

Additional file 3: of A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis

Nina Poulsen (3585842)
Randall Robinson (4216726)
Daniela Barile (561540)
Lotte Larsen (3585839)
Bart Buitenhuis (3404813)

May 2019

Figure S3. QQ-plots of P-values for milk oligosaccharides in Danish Holstein. (PDF 713 kb

A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis.

Poulsen, Nina A
Robinson, Randall C
Barile, Daniela
Larsen, Lotte B
Buitenhuis, Bart

May 2019

BackgroundHuman milk oligosaccharides (OS) play a key role in brain and gut microbiota development o...

Additional file 4: Table S2. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

Bart Buitenhuis (3404813)
Nina Poulsen (3585842)
Grum Gebreyesus (3585836)
Lotte Larsen (3585839)

August 2016

Significant SNP markers (FDR < 0.10) for the major milk proteins and their post translational modifi...

Additional file 3: Table S1. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

Bart Buitenhuis (3404813)
Nina Poulsen (3585842)
Grum Gebreyesus (3585836)
Lotte Larsen (3585839)

August 2016

Significant SNP markers (FDR < 0.10) for the major milk proteins and their post translational modifi...

Additional file 3: Table S1. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 8: Table S2. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 1: of Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle

Zexi Cai (5211698)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

May 2018

Figure S1. The locuszoom figure of previous report causative mutation of DGAT1 of the genome-wide as...

Additional file 2: of Multi-population GWAS and enrichment analyses reveal novel genomic regions and promising candidate genes underlying bovine milk fatty acid composition

G. Gebreyesus (6247244)
A. Buitenhuis (6431243)
N. Poulsen (6431246)
M. Visker (6431249)
Q. Zhang (1740952)
H. Valenberg (6431252)
D. Sun (6431255)
H. Bovenhuis (761608)

March 2019

List of genes identified as enriched using the DAVID based enrichment analysis. Gene names and the p...

Additional file 2: of Single nucleotide polymorphisms in candidate genes associated with milk yield in Argentinean Holstein and Holstein x Jersey cows

María Raschia (4852084)
Juan Nani (4852090)
Daniel Maizon (6080495)
María Beribe (4852081)
Ariel Amadio (3360812)
Mario Poli (522376)

January 2019

Genotypic and allelic frequencies obtained for the SNPs that passed the quality control. (DOC 62 kb

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Additional file 2: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

SNPs with Bonferroni corrected p-values higher than 0.05 (−log10(p) ≥ 8.50) for the fat yield. Colum...

Additional file 1 of Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle

Zexi Cai (5211698)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

January 2019

Figure S1. The locuszoom [1] figure of previous report causative mutation of DGAT1 of the genome-wid...

Additional file 7: Table S8. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Common significant SNPs (genome-wise 1Â % FDR) identified among all fertility related traits (CTFS a...

Additional file 4: Table S3. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing previously identified production or fertility trait QTL that overlap with the ...

Additional file 2: of A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis

Abstract

Extracted data

Additional file 2: of A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis

Abstract

Extracted data

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