Table S3. Comparison of Treatment and PVT lists, based on the first gene symbol listed for each Transcript Cluster, with datasets from literature. Worksheet tab âSummaryâ presents the numbers of genes found in common between the Treatment and PVT lists with published datasets. Subsequent worksheet tabs provide detailed comparisons for individual published datasets. Identification of a match required finding the exact same gene symbol in published datasets as the first listed gene symbol in the Treatment and PVT list. Thus, overlap may be underestimated if different annotations were given to the same gene. (XLSX 96Â kb
ModuleAnnotation_enrichR_M4. Annotation result of M4 performed in enrichR. EnrichR currently contain...
Figure S2. The concordance index of the co-expression 24 unique RNA-seq modules obtained from the tr...
Table S2. DAVID functional annotation clustering analysis of Parikshak et al. upregulated genes. Usi...
Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Tr...
Table S5. WGCNA module membership for all Transcript Clusters passing the low-expression threshold. ...
Table S8. Results of linear mixed-effects models on microRNA qPCR data, including tests for a relati...
Table S1. Description of the samples. Values of N/A for the RNA integrity number correspond to three...
The impact of data integration on the detection of differential expression following sleep deprivati...
GSEA_result. The file contains the result of Gene Set Enrichment Analysis (GSEA) which detects coord...
Table S1. The table shown Gene symbols in unique co-expression modules, a comparison was performed b...
ModuleAnnotation_enrichR_M18. Annotation result of M18 performed in enrichR. EnrichR currently conta...
Table S3. DAVID functional annotation clustering analysis of Parikshak et al. downregulated genes. U...
Table S1. Comparison of module genes identified by lmQCM and WGCNA from GSE48350 AD samples. (XLSX 1...
Figure S2. Heatmaps of mitochondrial genes in the Chow et al. and Garbett et al. microarray datasets...
Table S1. Tissue samples available and selected for inclusion in this study. Table S2. DEGS in TCX. ...
ModuleAnnotation_enrichR_M4. Annotation result of M4 performed in enrichR. EnrichR currently contain...
Figure S2. The concordance index of the co-expression 24 unique RNA-seq modules obtained from the tr...
Table S2. DAVID functional annotation clustering analysis of Parikshak et al. upregulated genes. Usi...
Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Tr...
Table S5. WGCNA module membership for all Transcript Clusters passing the low-expression threshold. ...
Table S8. Results of linear mixed-effects models on microRNA qPCR data, including tests for a relati...
Table S1. Description of the samples. Values of N/A for the RNA integrity number correspond to three...
The impact of data integration on the detection of differential expression following sleep deprivati...
GSEA_result. The file contains the result of Gene Set Enrichment Analysis (GSEA) which detects coord...
Table S1. The table shown Gene symbols in unique co-expression modules, a comparison was performed b...
ModuleAnnotation_enrichR_M18. Annotation result of M18 performed in enrichR. EnrichR currently conta...
Table S3. DAVID functional annotation clustering analysis of Parikshak et al. downregulated genes. U...
Table S1. Comparison of module genes identified by lmQCM and WGCNA from GSE48350 AD samples. (XLSX 1...
Figure S2. Heatmaps of mitochondrial genes in the Chow et al. and Garbett et al. microarray datasets...
Table S1. Tissue samples available and selected for inclusion in this study. Table S2. DEGS in TCX. ...
ModuleAnnotation_enrichR_M4. Annotation result of M4 performed in enrichR. EnrichR currently contain...
Figure S2. The concordance index of the co-expression 24 unique RNA-seq modules obtained from the tr...
Table S2. DAVID functional annotation clustering analysis of Parikshak et al. upregulated genes. Usi...