ModuleAnnotation_enrichR_M18. Annotation result of M18 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications [25, 56]. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 72Â kb
Table S7. Functional annotation charts of genes located within partially methylated domains with the...
Table S1. Comparison of module genes identified by lmQCM and WGCNA from GSE48350 AD samples. (XLSX 1...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
ModuleAnnotation_enrichR_M3. Annotation result of M3 performed in enrichR. EnrichR currently contain...
ModuleAnnotation_enrichR_M4. Annotation result of M4 performed in enrichR. EnrichR currently contain...
ModuleAnnotation_enrichR_M1. Annotation result of M1 performed in enrichR. EnrichR currently contain...
GSEA_result. The file contains the result of Gene Set Enrichment Analysis (GSEA) which detects coord...
Codes_and_Parameters. The documents contains codes and parameters used in WGCNA, GSEA and CSEA analy...
Table S7. DAVID functional annotation clustering analysis of Voineagu et al. downregulated genes. Us...
Read counts for genes in all HUGO gene families. Normalized read counts for 19,826 genes in all HUGO...
Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Tr...
Materials and Methods. Table S1. Raw data of qPCR analysis (average Cq value). Figure S1. Immunohist...
Table S2. DAVID functional annotation clustering analysis of Parikshak et al. upregulated genes. Usi...
Table S3. DAVID functional annotation clustering analysis of Parikshak et al. downregulated genes. U...
List of primary antibodies used in immunohistochemistry (IHC) and western blot (WB). (DOCX 28 kb
Table S7. Functional annotation charts of genes located within partially methylated domains with the...
Table S1. Comparison of module genes identified by lmQCM and WGCNA from GSE48350 AD samples. (XLSX 1...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
ModuleAnnotation_enrichR_M3. Annotation result of M3 performed in enrichR. EnrichR currently contain...
ModuleAnnotation_enrichR_M4. Annotation result of M4 performed in enrichR. EnrichR currently contain...
ModuleAnnotation_enrichR_M1. Annotation result of M1 performed in enrichR. EnrichR currently contain...
GSEA_result. The file contains the result of Gene Set Enrichment Analysis (GSEA) which detects coord...
Codes_and_Parameters. The documents contains codes and parameters used in WGCNA, GSEA and CSEA analy...
Table S7. DAVID functional annotation clustering analysis of Voineagu et al. downregulated genes. Us...
Read counts for genes in all HUGO gene families. Normalized read counts for 19,826 genes in all HUGO...
Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Tr...
Materials and Methods. Table S1. Raw data of qPCR analysis (average Cq value). Figure S1. Immunohist...
Table S2. DAVID functional annotation clustering analysis of Parikshak et al. upregulated genes. Usi...
Table S3. DAVID functional annotation clustering analysis of Parikshak et al. downregulated genes. U...
List of primary antibodies used in immunohistochemistry (IHC) and western blot (WB). (DOCX 28 kb
Table S7. Functional annotation charts of genes located within partially methylated domains with the...
Table S1. Comparison of module genes identified by lmQCM and WGCNA from GSE48350 AD samples. (XLSX 1...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...