ModuleAnnotation_enrichR_M3. Annotation result of M3 performed in enrichR. EnrichR currently contains annotated gene sets from 102 gene set libraries organized in 8 categories. Details of the gene set libraries in EnrichrR can be found in publications. Each tab of the file contains gene sets of a particular library that was found to be enriched in the module. The first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are related to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of the overlapping genes. The gene sets are ranked by combined score. (XLSX 1032Â kb
Table S3. DAVID functional annotation clustering analysis of Parikshak et al. downregulated genes. U...
Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Tr...
Gene Ontology (GO) cell component (CC), Kyoto Encyclopedia of Genes and Genomes (KEGG), Reactome and...
ModuleAnnotation_enrichR_M18. Annotation result of M18 performed in enrichR. EnrichR currently conta...
ModuleAnnotation_enrichR_M4. Annotation result of M4 performed in enrichR. EnrichR currently contain...
ModuleAnnotation_enrichR_M1. Annotation result of M1 performed in enrichR. EnrichR currently contain...
GSEA_result. The file contains the result of Gene Set Enrichment Analysis (GSEA) which detects coord...
Codes_and_Parameters. The documents contains codes and parameters used in WGCNA, GSEA and CSEA analy...
Table S7. DAVID functional annotation clustering analysis of Voineagu et al. downregulated genes. Us...
Materials and Methods. Table S1. Raw data of qPCR analysis (average Cq value). Figure S1. Immunohist...
Table S3 Lists of genes in each module. Each column shows the full list of genes in a given module. ...
Table S2. DAVID functional annotation clustering analysis of Parikshak et al. upregulated genes. Usi...
DNA motifs enriched in sequences upstream of GM6-regulated genes and known to interact with a protei...
Table S1. Comparison of module genes identified by lmQCM and WGCNA from GSE48350 AD samples. (XLSX 1...
Gene Ontology (GO) cell component (CC), Kyoto Encyclopedia of Genes and Genomes (KEGG), Reactome and...
Table S3. DAVID functional annotation clustering analysis of Parikshak et al. downregulated genes. U...
Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Tr...
Gene Ontology (GO) cell component (CC), Kyoto Encyclopedia of Genes and Genomes (KEGG), Reactome and...
ModuleAnnotation_enrichR_M18. Annotation result of M18 performed in enrichR. EnrichR currently conta...
ModuleAnnotation_enrichR_M4. Annotation result of M4 performed in enrichR. EnrichR currently contain...
ModuleAnnotation_enrichR_M1. Annotation result of M1 performed in enrichR. EnrichR currently contain...
GSEA_result. The file contains the result of Gene Set Enrichment Analysis (GSEA) which detects coord...
Codes_and_Parameters. The documents contains codes and parameters used in WGCNA, GSEA and CSEA analy...
Table S7. DAVID functional annotation clustering analysis of Voineagu et al. downregulated genes. Us...
Materials and Methods. Table S1. Raw data of qPCR analysis (average Cq value). Figure S1. Immunohist...
Table S3 Lists of genes in each module. Each column shows the full list of genes in a given module. ...
Table S2. DAVID functional annotation clustering analysis of Parikshak et al. upregulated genes. Usi...
DNA motifs enriched in sequences upstream of GM6-regulated genes and known to interact with a protei...
Table S1. Comparison of module genes identified by lmQCM and WGCNA from GSE48350 AD samples. (XLSX 1...
Gene Ontology (GO) cell component (CC), Kyoto Encyclopedia of Genes and Genomes (KEGG), Reactome and...
Table S3. DAVID functional annotation clustering analysis of Parikshak et al. downregulated genes. U...
Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Tr...
Gene Ontology (GO) cell component (CC), Kyoto Encyclopedia of Genes and Genomes (KEGG), Reactome and...