Additional file 2: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

Additional file 4: Table S4. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

Michele Bellesi (327926)
Luisa de Vivo (3462092)
Giulio Tononi (2644)
Chiara Cirelli (49454)

August 2015

Astrocyte genes upregulated in W + SD vs S (fold change >30 %, P < 0.01). (PDF 1105 kb

Additional file 5 of Circadian gene Rev-erbα influenced by sleep conduces to pregnancy by promoting endometrial decidualization via IL-6-PR-C/EBPβ axis

Liyuan Cui (11282929)
Feng Xu (89016)
Chunfang Xu (448778)
Yan Ding (39795)
Songcun Wang (11282932)
Meirong Du (14176415)

November 2022

Additional file 5: Fig. S5. Downregulated Rev-erbα and Wnt4 expression in DSCs of mice with sleep di...

Additional file 9: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

Hilary Uyhelji (5185652)
Doris Kupfer (5185649)
Vicky White (5185655)
Melinda Jackson (5185643)
Hans Van Dongen (5185646)
Dennis Burian (5185658)

May 2018

Table S8. Results of linear mixed-effects models on microRNA qPCR data, including tests for a relati...

Additional file 5: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

Jason Gerstner (3583790)
John Koberstein (3583787)
Adam Watson (3583784)
Nikolai Zapero (3583781)
Davide Risso (811836)
Terence Speed (3420260)
Marcos Frank (3583778)
Lucia Peixoto (520476)

October 2016

Differential expression due to circadian time following RUV normalization. (XLSX 58 kb

Additional file 8: Figure S1. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

Michele Bellesi (327926)
Luisa de Vivo (3462092)
Giulio Tononi (2644)
Chiara Cirelli (49454)

August 2015

Functional characterization of genes differentially expressed in wake (W) and sleep deprivation (SD)...

Additional file 3: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

Hilary Uyhelji (5185652)
Doris Kupfer (5185649)
Vicky White (5185655)
Melinda Jackson (5185643)
Hans Van Dongen (5185646)
Dennis Burian (5185658)

May 2018

Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Tr...

Additional file 2: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 3 differentially expressed genes. List of all differentially expressed genes following 3âweek...

Additional file 1: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 2 differentially expressed genes. List of all differentially expressed genes following 2âweek...

Additional file 6: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

Tiffany Rogers (4170940)
Allison Anacker (4170928)
Travis Kerr (4170931)
C. Forsberg (4170934)
Jing Wang (1228470)
Bing Zhang (129)
Jeremy Veenstra-VanderWeele (4170937)

June 2017

Most commonly differentially expressed genes across all comparisons. The genes that had the most fre...

Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

Gerstner, JR
Koberstein, JN
Watson, AJ
Zapero, N
Risso, D
Speed, TP
Frank, MG
Peixoto, L

April 2016

BACKGROUND: Why we sleep is still one of the most perplexing mysteries in biology. Strong evidence i...

Additional file 2 of Circadian gene Rev-erbα influenced by sleep conduces to pregnancy by promoting endometrial decidualization via IL-6-PR-C/EBPβ axis

Liyuan Cui (11282929)
Feng Xu (89016)
Chunfang Xu (448778)
Yan Ding (39795)
Songcun Wang (11282932)
Meirong Du (14176415)

November 2022

Additional file 2: Fig. S2. Downregulated Rev-erbα expression in ESCs of mice and human with sleep d...

Additional file 3: Table S3. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

Michele Bellesi (327926)
Luisa de Vivo (3462092)
Giulio Tononi (2644)
Chiara Cirelli (49454)

August 2015

Astrocyte genes upregulated in S vs W + SD (fold change >30 %, P < 0.01). (PDF 277 kb

Additional file 2 of Altered hippocampal transcriptome dynamics following sleep deprivation

Marie E. Gaine (11270085)
Ethan Bahl (11270088)
Snehajyoti Chatterjee (11270091)
Jacob J. Michaelson (10949913)
Ted Abel (11270094)
Lisa C. Lyons (9729657)

August 2021

Additional file 2: Table S1. RT-qPCR primers used. Validation of RNA-seq results was performed using...

Additional file 2: of Reductions in hypothalamic Gfap expression, glial cells and α-tanycytes in lean and hypermetabolic Gnasxl-deficient mice

Andrew Holmes (198001)
Shi Wong (3514166)
Michela Pulix (3514163)
Kirsty Johnson (3514169)
Niamh Horton (3514160)
Patricia Thomas (3489989)
João de Magalhães (3411860)
Antonius Plagge (188999)

April 2016

Functional enrichment analysis using the DAVID bioinformatics resources. The whole mouse genome was ...

Additional file 1: Table S1. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

Michele Bellesi (327926)
Luisa de Vivo (3462092)
Giulio Tononi (2644)
Chiara Cirelli (49454)

August 2015

Astrocyte genes upregulated because of time of day (3 am) (fold change >30 %, P < 0.01). (PDF 364 kb

Additional file 4: Table S4. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

Michele Bellesi (327926)
Luisa de Vivo (3462092)
Giulio Tononi (2644)
Chiara Cirelli (49454)

August 2015

Astrocyte genes upregulated in W + SD vs S (fold change >30 %, P < 0.01). (PDF 1105 kb

Additional file 5 of Circadian gene Rev-erbα influenced by sleep conduces to pregnancy by promoting endometrial decidualization via IL-6-PR-C/EBPβ axis

Liyuan Cui (11282929)
Feng Xu (89016)
Chunfang Xu (448778)
Yan Ding (39795)
Songcun Wang (11282932)
Meirong Du (14176415)

November 2022

Additional file 5: Fig. S5. Downregulated Rev-erbα and Wnt4 expression in DSCs of mice with sleep di...

Additional file 9: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

Hilary Uyhelji (5185652)
Doris Kupfer (5185649)
Vicky White (5185655)
Melinda Jackson (5185643)
Hans Van Dongen (5185646)
Dennis Burian (5185658)

May 2018

Table S8. Results of linear mixed-effects models on microRNA qPCR data, including tests for a relati...

Additional file 5: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

Jason Gerstner (3583790)
John Koberstein (3583787)
Adam Watson (3583784)
Nikolai Zapero (3583781)
Davide Risso (811836)
Terence Speed (3420260)
Marcos Frank (3583778)
Lucia Peixoto (520476)

October 2016

Differential expression due to circadian time following RUV normalization. (XLSX 58 kb

Additional file 8: Figure S1. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

Michele Bellesi (327926)
Luisa de Vivo (3462092)
Giulio Tononi (2644)
Chiara Cirelli (49454)

August 2015

Functional characterization of genes differentially expressed in wake (W) and sleep deprivation (SD)...

Additional file 3: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

Hilary Uyhelji (5185652)
Doris Kupfer (5185649)
Vicky White (5185655)
Melinda Jackson (5185643)
Hans Van Dongen (5185646)
Dennis Burian (5185658)

May 2018

Table S2. List of Treatment effect Transcript Clusters with fold change, P-value, and FDR for the Tr...

Additional file 2: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 3 differentially expressed genes. List of all differentially expressed genes following 3âweek...

Additional file 1: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 2 differentially expressed genes. List of all differentially expressed genes following 2âweek...

Additional file 6: of Effects of a social stimulus on gene expression in a mouse model of fragile X syndrome

Tiffany Rogers (4170940)
Allison Anacker (4170928)
Travis Kerr (4170931)
C. Forsberg (4170934)
Jing Wang (1228470)
Bing Zhang (129)
Jeremy Veenstra-VanderWeele (4170937)

June 2017

Most commonly differentially expressed genes across all comparisons. The genes that had the most fre...

Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

Gerstner, JR
Koberstein, JN
Watson, AJ
Zapero, N
Risso, D
Speed, TP
Frank, MG
Peixoto, L

April 2016

BACKGROUND: Why we sleep is still one of the most perplexing mysteries in biology. Strong evidence i...

Additional file 2 of Circadian gene Rev-erbα influenced by sleep conduces to pregnancy by promoting endometrial decidualization via IL-6-PR-C/EBPβ axis

Liyuan Cui (11282929)
Feng Xu (89016)
Chunfang Xu (448778)
Yan Ding (39795)
Songcun Wang (11282932)
Meirong Du (14176415)

November 2022

Additional file 2: Fig. S2. Downregulated Rev-erbα expression in ESCs of mice and human with sleep d...

Additional file 3: Table S3. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

Michele Bellesi (327926)
Luisa de Vivo (3462092)
Giulio Tononi (2644)
Chiara Cirelli (49454)

August 2015

Astrocyte genes upregulated in S vs W + SD (fold change >30 %, P < 0.01). (PDF 277 kb

Additional file 2 of Altered hippocampal transcriptome dynamics following sleep deprivation

Marie E. Gaine (11270085)
Ethan Bahl (11270088)
Snehajyoti Chatterjee (11270091)
Jacob J. Michaelson (10949913)
Ted Abel (11270094)
Lisa C. Lyons (9729657)

August 2021

Additional file 2: Table S1. RT-qPCR primers used. Validation of RNA-seq results was performed using...

Additional file 2: of Reductions in hypothalamic Gfap expression, glial cells and α-tanycytes in lean and hypermetabolic Gnasxl-deficient mice

Andrew Holmes (198001)
Shi Wong (3514166)
Michela Pulix (3514163)
Kirsty Johnson (3514169)
Niamh Horton (3514160)
Patricia Thomas (3489989)
João de Magalhães (3411860)
Antonius Plagge (188999)

April 2016

Functional enrichment analysis using the DAVID bioinformatics resources. The whole mouse genome was ...

Additional file 1: Table S1. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

Michele Bellesi (327926)
Luisa de Vivo (3462092)
Giulio Tononi (2644)
Chiara Cirelli (49454)

August 2015

Astrocyte genes upregulated because of time of day (3 am) (fold change >30 %, P < 0.01). (PDF 364 kb

Additional file 4: Table S4. of Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies

Michele Bellesi (327926)
Luisa de Vivo (3462092)
Giulio Tononi (2644)
Chiara Cirelli (49454)

August 2015

Astrocyte genes upregulated in W + SD vs S (fold change >30 %, P < 0.01). (PDF 1105 kb

Additional file 5 of Circadian gene Rev-erbα influenced by sleep conduces to pregnancy by promoting endometrial decidualization via IL-6-PR-C/EBPβ axis

Liyuan Cui (11282929)
Feng Xu (89016)
Chunfang Xu (448778)
Yan Ding (39795)
Songcun Wang (11282932)
Meirong Du (14176415)

November 2022

Additional file 5: Fig. S5. Downregulated Rev-erbα and Wnt4 expression in DSCs of mice with sleep di...

Additional file 9: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

Hilary Uyhelji (5185652)
Doris Kupfer (5185649)
Vicky White (5185655)
Melinda Jackson (5185643)
Hans Van Dongen (5185646)
Dennis Burian (5185658)

May 2018

Table S8. Results of linear mixed-effects models on microRNA qPCR data, including tests for a relati...

Additional file 2: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

Abstract

Extracted data

Additional file 2: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

Abstract

Extracted data

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