Additional file 1: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Additional file 10: Figure S5. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Results of overrepresentation test of GO biological process terms for comparisons between our genome...

Additional file 6: Table S3. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Detailed data on genes in seven signal pathways. Description of genes shown in Figs. 4, 5, 7, 9 and ...

Additional file 9: Table S5. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

Chad Highfill (3462467)
G. Reeves (3462470)
Stuart Macdonald (3240417)

August 2016

Differentially expressed genes in bodies. Table includes all genes surviving a genomewide FDR thresh...

Additional file 2: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 3 differentially expressed genes. List of all differentially expressed genes following 3âweek...

Additional file 3: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Aging differentially expressed genes. List of all differentially expressed genes following 3 weeks c...

Additional file 4: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 2 downregulated genes. List of all overrepresented GO terms associated with...

Additional file 5: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 3 downregulated genes. List of all overrepresented GO terms associated with...

Additional file 6: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 3 upregulated genes. List of all overrepresented GO terms associated with w...

Additional file 3: Dataset S1. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Gene list of significantly regulated probes and reciprocal comparison. Transcripts that are signific...

Additional file 9: Table S4. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Genes affected by 3 weeks diapause compared to ones implicated in aging and increased longevity. Mic...

Additional file 5: Table S2. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

SPIA of KEGG pathways. Significantly inhibited pathways are highlighted in blue and significantly ac...

Additional file 11: Figure S6. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Term enrichment analysis of GO biological process terms for comparisons among four genome-wide trans...

Additional file 8: Figure S4. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Altered gene expression in the MAPK signaling pathway during diapause. This scheme displays a genera...

Additional file 1: of Effects of evolutionary history on genome wide and phenotypic convergence in Drosophila populations

Mark Phillips (483051)
Grant Rutledge (3198813)
James Kezos (5845742)
Zachary Greenspan (5845745)
Andrew Talbott (5845748)
Sara Matty (5845751)
Hamid Arain (5845754)
Laurence Mueller (5845757)
Michael Rose (321021)
Parvin Shahrestani (260210)

October 2018

Mortality Data. File containing daily mortality data for the TDO and TSO populations. (XLSX 42 kb

Additional file 1: Figure S1. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Heat map of the top 100 most variable genes in our microarray study. Columns depicted: 3wD (1_3wD-4_...

Additional file 10: Figure S5. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Results of overrepresentation test of GO biological process terms for comparisons between our genome...

Additional file 6: Table S3. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Detailed data on genes in seven signal pathways. Description of genes shown in Figs. 4, 5, 7, 9 and ...

Additional file 9: Table S5. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

Chad Highfill (3462467)
G. Reeves (3462470)
Stuart Macdonald (3240417)

August 2016

Differentially expressed genes in bodies. Table includes all genes surviving a genomewide FDR thresh...

Additional file 2: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 3 differentially expressed genes. List of all differentially expressed genes following 3âweek...

Additional file 3: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Aging differentially expressed genes. List of all differentially expressed genes following 3 weeks c...

Additional file 4: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 2 downregulated genes. List of all overrepresented GO terms associated with...

Additional file 5: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 3 downregulated genes. List of all overrepresented GO terms associated with...

Additional file 6: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 3 upregulated genes. List of all overrepresented GO terms associated with w...

Additional file 3: Dataset S1. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Gene list of significantly regulated probes and reciprocal comparison. Transcripts that are signific...

Additional file 9: Table S4. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Genes affected by 3 weeks diapause compared to ones implicated in aging and increased longevity. Mic...

Additional file 5: Table S2. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

SPIA of KEGG pathways. Significantly inhibited pathways are highlighted in blue and significantly ac...

Additional file 11: Figure S6. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Term enrichment analysis of GO biological process terms for comparisons among four genome-wide trans...

Additional file 8: Figure S4. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Altered gene expression in the MAPK signaling pathway during diapause. This scheme displays a genera...

Additional file 1: of Effects of evolutionary history on genome wide and phenotypic convergence in Drosophila populations

Mark Phillips (483051)
Grant Rutledge (3198813)
James Kezos (5845742)
Zachary Greenspan (5845745)
Andrew Talbott (5845748)
Sara Matty (5845751)
Hamid Arain (5845754)
Laurence Mueller (5845757)
Michael Rose (321021)
Parvin Shahrestani (260210)

October 2018

Mortality Data. File containing daily mortality data for the TDO and TSO populations. (XLSX 42 kb

Additional file 1: Figure S1. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Heat map of the top 100 most variable genes in our microarray study. Columns depicted: 3wD (1_3wD-4_...

Additional file 10: Figure S5. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Results of overrepresentation test of GO biological process terms for comparisons between our genome...

Additional file 6: Table S3. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

Lucie Kučerová (659971)
Olga Kubrak (3572051)
Jonas Bengtsson (3572054)
Hynek Strnad (168251)
Sören Nylin (148408)
Ulrich Theopold (253246)
Dick Nässel (3572057)

January 2016

Detailed data on genes in seven signal pathways. Description of genes shown in Figs. 4, 5, 7, 9 and ...

Additional file 9: Table S5. of Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population

Chad Highfill (3462467)
G. Reeves (3462470)
Stuart Macdonald (3240417)

August 2016

Differentially expressed genes in bodies. Table includes all genes surviving a genomewide FDR thresh...

Additional file 1: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Abstract

Extracted data

Additional file 1: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Abstract

Extracted data

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