Additional file 1: of SWI/SNF regulates half of its targets without the need of ATP-driven nucleosome remodeling by Brahma

Figure S1. Comparison of input-corrected enrichment values for RNAPII and BRM. Table S1. List of BRM target genes in S2 cells. Figure S2. Heat map of normalized gene expression of BRM target genes. Figure S3. Gene ontology classification of BRM target genes. Figure S4. Metagene analysis of BRM in the BRM target genes. Figure S5. Metagene analysis of RNAPII and nucleosome occupancies in BRM target genes that are upregulated or downregulated by BRM. Table S2. List of genes differentially expressed in BRM-depleted cells. Figure S6. recBRM-V5 and recBRM-K804R-V5 are incorporated into SWI/SNF complexes. Figure S7. Genomic distribution of recBRM-V5 and recBRM-K804R-V5 in S2 cells analyzed by ChIP-seq. Figure S8. Distributions of recBRM-V5 and recBRM-K804R-V5 in ATPase dependent and ATPase-independent genes. Figure S9. Analysis of TATA-box occurrence in the promoters of the BRM target genes. Table S3. List of enriched motifs in the promoters of BRM target genes. Table S4. Average fpmk values for selected transcription factors. Figure S10. Metagene analysis of RNA polymerase II distribution in the ATPase-dependent and ATPase-independent genes. Table S5. Sequences of PCR primers used for dsRNA synthesis. Figure S11. RNA-seq experiments: correlation analysis of biological replicates. (PDF 4624 kb