Additional file 1: Table S1. of Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries

Gene expression level for ovine BMDMs pre- and post-LPS stimulation, quantified against the full Oar v3.1 reference transcriptome using polyA-selected and rRNA-depleted libraries. Table S2. Comparison of polyA+ and ribo-minus TPM distributions with different reference transcriptomes. Table S3. Genes detected in both polyA-selected and rRNA-depleted libraries, if quantified against the full Oar v3.1 reference transcriptome. Table S4. Genes detected only in polyA-selected libraries, if quantified against the full Oar v3.1 reference transcriptome. Table S5. Genes detected only in rRNA-depleted libraries, if quantified against the full Oar v3.1 reference transcriptome. Table S6. Number of pseudoalignments per sample, if quantified against the full Oar v3.1 reference transcriptome. Table S7. Differences in expression between polyA-selected and rRNA-depleted libraries when varying the reference transcriptome. Table S8. Protein-coding genes with the largest absolute difference between polyA+ and ribo-minus TPM. Table S9. GO term enrichment for the set of protein-coding genes with the largest absolute difference between polyA+ and ribo-minus TPM. Table S10. Human gene expression meta-atlas, generated using polyA+ and rRNA-depleted ENCODE RNA-seq data. Table S11. Coding potential of putative novel CDS. (XLSX 32632 kb