Additional file 11: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Figure S10. Secretome orthology relations and core effectorome phylogeny. (A) Heatmap of SP orthologs found for the formae speciales genomes after ortholog clustering using OrthoFinder on the predicted proteomes of the isolates T1–20, S1459, LIB1609, DAC, 96224, LOL, AVE, POAE, DH14. Every column corresponds to one of the 805 Bgh DH14 predicted SPs, while color-coding depicts the number of orthologs in the corresponding orthogroup. Hierarchical clustering (Euclidean method) for the formae speciales and the SPs are given on the left and the top of the heatmap, respectively. (B) Maximum likelihood phylogeny tree of the 805 SPs. The tree was generated using IQ-TREE based on the mature peptide sequences of the Bgh DH14 SPs. Orange edge tips indicate the 190 core CSEPs which have orthologs in all formae speciales. The scale bar indicates the number of amino-acid substitutions per site. (PDF 2195 kb