Figure S5. Heatmap of gene orthologues differentially abundant between the two F. prausnitzii genomogroups (pâ<â0.05 in Wilcoxon test). Dendrogram on top reflect hierarchical clustering using Ward.D2 algorithm. COG annotations for orthologous groups are shown as a colored bar on the left and in the relevant legend inset. Orange colour in heatmap corresponds to single copy orthologues, other colours used for orthologous groups with multiple member per genome (see color code on the right). (PDF 104 kb
Figure S6. qPCR analysis of prophage induction in strain F. prausnitzii A2–165. qPCR was performed o...
Figure S1. Phylogenetic relatedness of the analyzed P. parmentieri strains: A. Genomic Average Nucle...
Figure S10. Secretome orthology relations and core effectorome phylogeny. (A) Heatmap of SP ortholog...
Figure S3. De novo orthologous protein groups (nâ=â10,630) encoded in 31âF. prausnitzii genome...
Figure S2. BLASTn-based pairwise sequence coverage between available 31 complete and draft genomes o...
Figure S4. Composition of F. prausnitzii pan-, core- and accessory genome. A, Pan- and core genome a...
Table S4. List of 468 protein orthologues in F. prausnitzii demonstrating differential abundance bet...
Table S5. List of prophage regions found in the F. prausnitzii genomes and their relationships to th...
Figure S1. Schematic representation of pairwise comparisons of locations of LCBs in genomes of F. pr...
Table S3. List of 10,630 protein orthologues encoded by genomes of F. prausnitzii with annotation ac...
R scripts and data tables needed to reproduce figures in the manuscript: Comparative analysis of Fae...
Table S1. Strains representing other species of the family Ruminococcaceae, used for comparative pur...
Table S2. List of 245 orthologous genes in the family Ruminococcaceae used for phylogeny inference. ...
R scripts and data tables needed to reproduce figures in the manuscript: Comparative analysis of Fa...
Table S6. Distribution of carbohydrate active enzyme conserved domains in the strains of F. prausnit...
Figure S6. qPCR analysis of prophage induction in strain F. prausnitzii A2–165. qPCR was performed o...
Figure S1. Phylogenetic relatedness of the analyzed P. parmentieri strains: A. Genomic Average Nucle...
Figure S10. Secretome orthology relations and core effectorome phylogeny. (A) Heatmap of SP ortholog...
Figure S3. De novo orthologous protein groups (nâ=â10,630) encoded in 31âF. prausnitzii genome...
Figure S2. BLASTn-based pairwise sequence coverage between available 31 complete and draft genomes o...
Figure S4. Composition of F. prausnitzii pan-, core- and accessory genome. A, Pan- and core genome a...
Table S4. List of 468 protein orthologues in F. prausnitzii demonstrating differential abundance bet...
Table S5. List of prophage regions found in the F. prausnitzii genomes and their relationships to th...
Figure S1. Schematic representation of pairwise comparisons of locations of LCBs in genomes of F. pr...
Table S3. List of 10,630 protein orthologues encoded by genomes of F. prausnitzii with annotation ac...
R scripts and data tables needed to reproduce figures in the manuscript: Comparative analysis of Fae...
Table S1. Strains representing other species of the family Ruminococcaceae, used for comparative pur...
Table S2. List of 245 orthologous genes in the family Ruminococcaceae used for phylogeny inference. ...
R scripts and data tables needed to reproduce figures in the manuscript: Comparative analysis of Fa...
Table S6. Distribution of carbohydrate active enzyme conserved domains in the strains of F. prausnit...
Figure S6. qPCR analysis of prophage induction in strain F. prausnitzii A2–165. qPCR was performed o...
Figure S1. Phylogenetic relatedness of the analyzed P. parmentieri strains: A. Genomic Average Nucle...
Figure S10. Secretome orthology relations and core effectorome phylogeny. (A) Heatmap of SP ortholog...