Table S4. Differentially expressed genes in the mammary gland of cows fed corn stover (CS) vs. alfalfa hay (AH). The cutoff is set at 1.5-fold change and p < 0.05. Table S5. Differentially expressed proteins in the mammary gland of cows fed corn stover (CS) vs. alfalfa hay (AH). The cutoff is set at 1.2-fold change and p < 0.05. Table S6. Differentially expressed genes found in both transcriptomic and proteomic analyses in the mammary gland of cows fed corn stover (CS) vs. alfalfa hay (AH). (ZIP 164 kb
Correlation plot of gene expression level (in log10 FPKM) between depleted and non-depleted RNA samp...
Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...
Significant SNP markers (FDR < 0.10) for the major milk proteins and their post translational modifi...
Table S7. A list of common differentially expressed genes and differentially expressed proteins in t...
Differentially expressed genes identified from the comparison of AH vs. CS, AH vs. RS, and RS vs. CS...
Ingredients and nutrient composition of the experimental diet. Table S2. The relative abundance of m...
RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...
Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathways enriched in the ovine mammary gland during ...
Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infect...
Sequencing Metrics; total reads, aligned reads and uniquely mapped reads per sample in each tissue w...
Table S1 and S2. Multiple testing corrections for the module trait relationship using Benjamini-Hoch...
Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...
Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...
Table S1. Milk composition of different species (%). Table S2. Averages and range of reported concen...
Gene clusters differing in expression between the CoPS-1/2 (coagulase-positive Staphyloccoci in 1st ...
Correlation plot of gene expression level (in log10 FPKM) between depleted and non-depleted RNA samp...
Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...
Significant SNP markers (FDR < 0.10) for the major milk proteins and their post translational modifi...
Table S7. A list of common differentially expressed genes and differentially expressed proteins in t...
Differentially expressed genes identified from the comparison of AH vs. CS, AH vs. RS, and RS vs. CS...
Ingredients and nutrient composition of the experimental diet. Table S2. The relative abundance of m...
RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...
Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathways enriched in the ovine mammary gland during ...
Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infect...
Sequencing Metrics; total reads, aligned reads and uniquely mapped reads per sample in each tissue w...
Table S1 and S2. Multiple testing corrections for the module trait relationship using Benjamini-Hoch...
Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...
Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...
Table S1. Milk composition of different species (%). Table S2. Averages and range of reported concen...
Gene clusters differing in expression between the CoPS-1/2 (coagulase-positive Staphyloccoci in 1st ...
Correlation plot of gene expression level (in log10 FPKM) between depleted and non-depleted RNA samp...
Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infe...
Significant SNP markers (FDR < 0.10) for the major milk proteins and their post translational modifi...