Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Additional file 6: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression file of novel DELs in the dry and lactation periods. (XLSX 230 kb

Additional file 7: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

Alessandra Crisà (449807)
Fabrizio Ferrè (116771)
Giovanni Chillemi (9621)
Bianca Moioli (449809)

November 2016

Directed Acyclic Graphs (DAGs) for the Biological Process, Molecular Function and Cellular Component...

Additional file 1: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete details of the protocols used for library preparation, primer design and sequences, and qPC...

Additional file 5: Table S5. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Gene ontology functional annotation clusters enriched in the ovine mammary gland during late pregnan...

Additional file 2: Table S2. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...

Additional file 7: Table S9. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

And supplementary text detailing the analysis used to identify clusters of differentially expressed ...

Additional file 8: of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Comparison of two approaches to identify differentially expressed genes during the transition from l...

Additional file 4: of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Supplementary text detailing RT-qPCR validation of the RNA-seq data. Table S4. Candidate genes measu...

Additional file 3: Figure S1. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

And supplementary text showing similarity between the RNA-seq samples using principle components ana...

Additional file 1: of Examination of the xanthosine response on gene expression of mammary epithelial cells using RNA-seq technology

Shanti Choudhary (5514620)
Wenli Li (337819)
Derek Bickhart (275943)
Ramneek Verma (5514626)
R. Sethi (2137225)
C. Mukhopadhyay (5514617)
Ratan Choudhary (5514623)

July 2018

Table S1. List of RT-qPCR primers sequences, product length and their annealing temperatures. Table ...

Additional file 3: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S4. Differentially expressed genes in the mammary gland of cows fed corn stover (CS) vs. alfal...

Additional file 4: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S7. A list of common differentially expressed genes and differentially expressed proteins in t...

Additional file 4: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete list of genes considered in the development of the tissue cross-talk networks between mamma...

Additional file 3: of Relative effects of location relative to the corpus luteum and lactation on the transcriptome of the bovine oviduct epithelium

Yann Locatelli (345492)
Niamh Forde (476827)
Helmut Blum (157522)
Alexander Graf (157514)
BenoĂŽt PiĂŠgu (3413936)
Pascal Mermillod (84530)
Eckhard Wolf (39870)
Patrick Lonergan (476829)
Marie Saint-Dizier (6496973)

March 2019

Table S3. Exhaustive and top-20 lists of up- and down-regulated genes in ipsilateral vs. contralater...

Additional file 1: of Relative effects of location relative to the corpus luteum and lactation on the transcriptome of the bovine oviduct epithelium

Yann Locatelli (345492)
Niamh Forde (476827)
Helmut Blum (157522)
Alexander Graf (157514)
BenoĂŽt PiĂŠgu (3413936)
Pascal Mermillod (84530)
Eckhard Wolf (39870)
Patrick Lonergan (476829)
Marie Saint-Dizier (6496973)

March 2019

Table S1. Exhaustive and top-20 lists of up- and down-regulated genes in post-partum lactating (L) v...

Additional file 6: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression file of novel DELs in the dry and lactation periods. (XLSX 230 kb

Additional file 7: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

Alessandra Crisà (449807)
Fabrizio Ferrè (116771)
Giovanni Chillemi (9621)
Bianca Moioli (449809)

November 2016

Directed Acyclic Graphs (DAGs) for the Biological Process, Molecular Function and Cellular Component...

Additional file 1: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete details of the protocols used for library preparation, primer design and sequences, and qPC...

Additional file 5: Table S5. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Gene ontology functional annotation clusters enriched in the ovine mammary gland during late pregnan...

Additional file 2: Table S2. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...

Additional file 7: Table S9. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

And supplementary text detailing the analysis used to identify clusters of differentially expressed ...

Additional file 8: of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Comparison of two approaches to identify differentially expressed genes during the transition from l...

Additional file 4: of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

Supplementary text detailing RT-qPCR validation of the RNA-seq data. Table S4. Candidate genes measu...

Additional file 3: Figure S1. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

And supplementary text showing similarity between the RNA-seq samples using principle components ana...

Additional file 1: of Examination of the xanthosine response on gene expression of mammary epithelial cells using RNA-seq technology

Shanti Choudhary (5514620)
Wenli Li (337819)
Derek Bickhart (275943)
Ramneek Verma (5514626)
R. Sethi (2137225)
C. Mukhopadhyay (5514617)
Ratan Choudhary (5514623)

July 2018

Table S1. List of RT-qPCR primers sequences, product length and their annealing temperatures. Table ...

Additional file 3: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S4. Differentially expressed genes in the mammary gland of cows fed corn stover (CS) vs. alfal...

Additional file 4: of Understanding the regulatory mechanisms of milk production using integrative transcriptomic and proteomic analyses: improving inefficient utilization of crop by-products as forage in dairy industry

Wenting Dai (434815)
Quanjuan Wang (5315291)
Fengqi Zhao (4113484)
Jianxin Liu (422013)
Hongyun Liu (185898)

May 2018

Table S7. A list of common differentially expressed genes and differentially expressed proteins in t...

Additional file 4: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete list of genes considered in the development of the tissue cross-talk networks between mamma...

Additional file 3: of Relative effects of location relative to the corpus luteum and lactation on the transcriptome of the bovine oviduct epithelium

Yann Locatelli (345492)
Niamh Forde (476827)
Helmut Blum (157522)
Alexander Graf (157514)
BenoĂŽt PiĂŠgu (3413936)
Pascal Mermillod (84530)
Eckhard Wolf (39870)
Patrick Lonergan (476829)
Marie Saint-Dizier (6496973)

March 2019

Table S3. Exhaustive and top-20 lists of up- and down-regulated genes in ipsilateral vs. contralater...

Additional file 1: of Relative effects of location relative to the corpus luteum and lactation on the transcriptome of the bovine oviduct epithelium

Yann Locatelli (345492)
Niamh Forde (476827)
Helmut Blum (157522)
Alexander Graf (157514)
BenoĂŽt PiĂŠgu (3413936)
Pascal Mermillod (84530)
Eckhard Wolf (39870)
Patrick Lonergan (476829)
Marie Saint-Dizier (6496973)

March 2019

Table S1. Exhaustive and top-20 lists of up- and down-regulated genes in post-partum lactating (L) v...

Additional file 6: of Transcriptome sequencing to detect the potential role of long non-coding RNAs in bovine mammary gland during the dry and lactation period

Bing Yang (142278)
Beilei Jiao (4507786)
Wei Ge (39218)
Xiaolan Zhang (76101)
Shanhe Wang (4507789)
Hongbo Zhao (539923)
Xin Wang (91924)

August 2018

The expression file of novel DELs in the dry and lactation periods. (XLSX 230 kb

Additional file 7: of RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

Alessandra Crisà (449807)
Fabrizio Ferrè (116771)
Giovanni Chillemi (9621)
Bianca Moioli (449809)

November 2016

Directed Acyclic Graphs (DAGs) for the Biological Process, Molecular Function and Cellular Component...

Additional file 1: of Higher plane of nutrition pre-weaning enhances Holstein calf mammary gland development through alterations in the parenchyma and fat pad transcriptome

M. Vailati-Riboni (3441542)
R. Bucktrout (6075923)
S. Zhan (6075926)
A. Geiger (6075929)
J. McCann (6075932)
R. Akers (6075935)
J. Loor (3441557)

December 2018

Complete details of the protocols used for library preparation, primer design and sequences, and qPC...

Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Abstract

Extracted data

Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Abstract

Extracted data

Related items

Related items

Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Abstract

Extracted data

Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Abstract

Extracted data

Related items

Related items

Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling