Additional file 18: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Additional file 13: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Melanin protects Z. tritici against SDHI fungicides. Reduction in growth by fungicides (% growth dec...

Additional file 9: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Non-melanized mutants grow faster than the wild-types. Radial growth rates (slope of the curves) of ...

Additional file 16: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

No significant difference in the distribution of mean gray values of different Z. tritici strains be...

Additional file 6: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Reduced expression of genes in the Pks1 cluster in Δzmr1 mutants. Mean and standard error (se) of CP...

Additional file 14: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

No insertions of transposable elements were identified upstream of Zmr1 in IPO323. A) Melanization l...

Additional file 5: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Zmr1 regulates melanin biosynthesis in Z. tritici. (A) Three independent Zmr1 disruptant mutants in ...

Additional file 19: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Generation of mutants (A) Schematic diagram showing the location of primers used for generating Zmr1...

Additional file 4: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Zmr1 expression levels are lower in 3D1 than in 3D7 at 7 days post inoculation. Mean and standard er...

Additional file 11: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Melanin is not essential for virulence. All three 3D7Δzmr1 mutants were equally virulent on the wint...

Additional file 17: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Melanization and Zmr1 expression levels in Z. tritici strains from around the world. Means and stand...

Additional file 12: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Melanin-deficient mutants are not impaired in virulence. Mean of percentage of leaf area covered by ...

Additional file 2: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
ClĂŠmence Plissonneau (4761663)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea SĂĄnchez-Vallet (5519939)

July 2018

Comparison of the QTLs obtained using the genome of the reference strain IPO323 and of the parental ...

Additional file 1: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

3D7 accumulates more melanin than 3D1. Means and standard errors of gray values (0 = black, 255 = wh...

Additional file 15: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

SNPs in Zmr1 regulatory sequences. Alignment of the nucleotide sequences 1862 bp upstream of the cod...

Additional file 7: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Sequence variation in Zmr1 promoter contributes to differences in melanin accumulation. Means and st...

Additional file 13: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Melanin protects Z. tritici against SDHI fungicides. Reduction in growth by fungicides (% growth dec...

Additional file 9: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Non-melanized mutants grow faster than the wild-types. Radial growth rates (slope of the curves) of ...

Additional file 16: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

No significant difference in the distribution of mean gray values of different Z. tritici strains be...

Additional file 6: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Reduced expression of genes in the Pks1 cluster in Δzmr1 mutants. Mean and standard error (se) of CP...

Additional file 14: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

No insertions of transposable elements were identified upstream of Zmr1 in IPO323. A) Melanization l...

Additional file 5: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Zmr1 regulates melanin biosynthesis in Z. tritici. (A) Three independent Zmr1 disruptant mutants in ...

Additional file 19: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Generation of mutants (A) Schematic diagram showing the location of primers used for generating Zmr1...

Additional file 4: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Zmr1 expression levels are lower in 3D1 than in 3D7 at 7 days post inoculation. Mean and standard er...

Additional file 11: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Melanin is not essential for virulence. All three 3D7Δzmr1 mutants were equally virulent on the wint...

Additional file 17: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Melanization and Zmr1 expression levels in Z. tritici strains from around the world. Means and stand...

Additional file 12: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Melanin-deficient mutants are not impaired in virulence. Mean of percentage of leaf area covered by ...

Additional file 2: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
ClĂŠmence Plissonneau (4761663)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea SĂĄnchez-Vallet (5519939)

July 2018

Comparison of the QTLs obtained using the genome of the reference strain IPO323 and of the parental ...

Additional file 1: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

3D7 accumulates more melanin than 3D1. Means and standard errors of gray values (0 = black, 255 = wh...

Additional file 15: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

SNPs in Zmr1 regulatory sequences. Alignment of the nucleotide sequences 1862 bp upstream of the cod...

Additional file 7: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Sequence variation in Zmr1 promoter contributes to differences in melanin accumulation. Means and st...

Additional file 13: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Melanin protects Z. tritici against SDHI fungicides. Reduction in growth by fungicides (% growth dec...

Additional file 9: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

Non-melanized mutants grow faster than the wild-types. Radial growth rates (slope of the curves) of ...

Additional file 16: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Parvathy Krishnan (4796013)
Lukas Meile (5519942)
Clémence Plissonneau (5519978)
Xin Ma (37268)
Fanny Hartmann (4761666)
Daniel Croll (325019)
Bruce McDonald (3463994)
Andrea Sánchez-Vallet (2653447)

July 2018

No significant difference in the distribution of mean gray values of different Z. tritici strains be...

Additional file 18: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Abstract

Extracted data

Additional file 18: of Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Abstract

Extracted data

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